Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF707 and GFF708 are separated by 4 nucleotides GFF708 and GFF709 overlap by 1 nucleotides
GFF707 - probable integral membrane protein NMA1898, at 764,139 to 765,566
GFF707
GFF708 - Oxidoreductase, GMC family, at 765,571 to 767,286
GFF708
GFF709 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 767,286 to 768,446
GFF709
Position (kb) 765
766
767
768 Strain fitness (log2 ratio) -2
-1
0
1 at 764.659 kb on - strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.725 kb on - strand, within GFF707 at 764.725 kb on - strand, within GFF707 at 764.725 kb on - strand, within GFF707 at 764.986 kb on - strand, within GFF707 at 764.986 kb on - strand, within GFF707 at 765.716 kb on + strand at 765.996 kb on - strand, within GFF708 at 765.996 kb on - strand, within GFF708 at 766.298 kb on + strand, within GFF708 at 766.298 kb on + strand, within GFF708 at 766.298 kb on + strand, within GFF708 at 766.299 kb on - strand, within GFF708 at 766.299 kb on - strand, within GFF708 at 766.361 kb on + strand, within GFF708 at 766.362 kb on - strand, within GFF708 at 766.594 kb on + strand, within GFF708 at 766.594 kb on + strand, within GFF708 at 766.594 kb on + strand, within GFF708 at 766.594 kb on + strand, within GFF708 at 766.594 kb on + strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.652 kb on + strand, within GFF708 at 766.745 kb on + strand, within GFF708 at 766.896 kb on - strand, within GFF708 at 766.896 kb on - strand, within GFF708 at 766.896 kb on - strand, within GFF708 at 766.953 kb on - strand, within GFF708 at 767.114 kb on + strand, within GFF708 at 767.115 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.287 kb on + strand at 767.347 kb on + strand at 767.348 kb on - strand at 767.377 kb on + strand at 767.377 kb on + strand at 767.377 kb on + strand at 767.377 kb on + strand at 767.377 kb on + strand at 767.378 kb on - strand at 767.491 kb on + strand, within GFF709 at 767.492 kb on - strand, within GFF709 at 767.548 kb on + strand, within GFF709 at 767.548 kb on + strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.582 kb on - strand, within GFF709 at 767.582 kb on - strand, within GFF709 at 767.677 kb on + strand, within GFF709 at 767.677 kb on + strand, within GFF709 at 767.678 kb on - strand, within GFF709 at 767.740 kb on + strand, within GFF709 at 767.888 kb on - strand, within GFF709 at 767.888 kb on - strand, within GFF709 at 768.101 kb on - strand, within GFF709 at 768.101 kb on - strand, within GFF709 at 768.211 kb on + strand, within GFF709 at 768.211 kb on + strand, within GFF709 at 768.211 kb on + strand, within GFF709 at 768.212 kb on - strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.230 kb on - strand, within GFF709 at 768.230 kb on - strand, within GFF709 at 768.230 kb on - strand, within GFF709
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 764,659 - GFF707 0.36 -0.6 764,724 + GFF707 0.41 +0.5 764,724 + GFF707 0.41 +0.6 764,724 + GFF707 0.41 +0.4 764,724 + GFF707 0.41 -1.0 764,724 + GFF707 0.41 -0.1 764,724 + GFF707 0.41 -0.3 764,724 + GFF707 0.41 -0.2 764,724 + GFF707 0.41 -0.1 764,724 + GFF707 0.41 -0.8 764,725 - GFF707 0.41 -1.3 764,725 - GFF707 0.41 -0.1 764,725 - GFF707 0.41 -0.1 764,986 - GFF707 0.59 -0.6 764,986 - GFF707 0.59 +0.6 765,716 + -1.6 765,996 - GFF708 0.25 +0.1 765,996 - GFF708 0.25 -0.4 766,298 + GFF708 0.42 -0.1 766,298 + GFF708 0.42 -0.1 766,298 + GFF708 0.42 +0.1 766,299 - GFF708 0.42 +0.1 766,299 - GFF708 0.42 -0.0 766,361 + GFF708 0.46 -0.3 766,362 - GFF708 0.46 +1.3 766,594 + GFF708 0.60 -0.7 766,594 + GFF708 0.60 +0.1 766,594 + GFF708 0.60 -1.0 766,594 + GFF708 0.60 +0.3 766,594 + GFF708 0.60 +0.2 766,595 - GFF708 0.60 -0.2 766,595 - GFF708 0.60 +0.2 766,595 - GFF708 0.60 -0.8 766,595 - GFF708 0.60 +0.9 766,595 - GFF708 0.60 -0.3 766,595 - GFF708 0.60 -0.7 766,595 - GFF708 0.60 -0.9 766,595 - GFF708 0.60 +0.5 766,595 - GFF708 0.60 -1.1 766,652 + GFF708 0.63 -1.2 766,745 + GFF708 0.68 +1.0 766,896 - GFF708 0.77 -0.5 766,896 - GFF708 0.77 -0.4 766,896 - GFF708 0.77 +0.3 766,953 - GFF708 0.81 -0.5 767,114 + GFF708 0.90 +1.6 767,115 - -1.2 767,268 - +0.3 767,268 - +0.2 767,268 - -1.5 767,287 + -0.6 767,347 + -0.5 767,348 - +0.2 767,377 + -0.3 767,377 + -0.8 767,377 + -0.5 767,377 + -1.9 767,377 + +0.3 767,378 - -0.6 767,491 + GFF709 0.18 -0.1 767,492 - GFF709 0.18 +0.3 767,548 + GFF709 0.23 +0.2 767,548 + GFF709 0.23 -1.2 767,549 - GFF709 0.23 -0.4 767,549 - GFF709 0.23 -0.7 767,549 - GFF709 0.23 -0.5 767,549 - GFF709 0.23 +0.5 767,582 - GFF709 0.25 +0.3 767,582 - GFF709 0.25 -1.5 767,677 + GFF709 0.34 -0.2 767,677 + GFF709 0.34 -0.2 767,678 - GFF709 0.34 +0.6 767,740 + GFF709 0.39 -0.5 767,888 - GFF709 0.52 +0.5 767,888 - GFF709 0.52 +0.9 768,101 - GFF709 0.70 +0.0 768,101 - GFF709 0.70 -0.7 768,211 + GFF709 0.80 +0.3 768,211 + GFF709 0.80 -0.3 768,211 + GFF709 0.80 -0.5 768,212 - GFF709 0.80 +1.3 768,229 + GFF709 0.81 -0.7 768,229 + GFF709 0.81 +1.0 768,229 + GFF709 0.81 -0.5 768,229 + GFF709 0.81 +0.7 768,230 - GFF709 0.81 -0.8 768,230 - GFF709 0.81 -0.2 768,230 - GFF709 0.81 -0.7
Or see this region's nucleotide sequence