Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7058 and GFF7059 are separated by 13 nucleotides GFF7059 and GFF7060 are separated by 156 nucleotides GFF7060 and GFF7061 are separated by 15 nucleotides GFF7061 and GFF7062 are separated by 115 nucleotides
GFF7058 - Zinc-binding GTPase YciC, at 18,026 to 19,219
GFF7058
GFF7059 - Zinc uptake regulation protein Zur, at 19,233 to 19,733
GFF7059
GFF7060 - BUG/TctC family periplasmic protein, at 19,890 to 20,885
GFF7060
GFF7061 - no description, at 20,901 to 21,239
GFF7061
GFF7062 - probable carboxylesterase, at 21,355 to 22,017
GFF7062
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 19.234 kb on + strand at 19.235 kb on - strand at 19.235 kb on - strand at 19.235 kb on - strand at 19.235 kb on - strand at 19.540 kb on + strand, within GFF7059 at 19.789 kb on + strand at 19.790 kb on - strand at 19.805 kb on + strand at 19.805 kb on + strand at 19.918 kb on + strand at 19.949 kb on - strand at 19.993 kb on - strand, within GFF7060 at 20.027 kb on + strand, within GFF7060 at 20.028 kb on - strand, within GFF7060 at 20.176 kb on - strand, within GFF7060 at 20.242 kb on - strand, within GFF7060 at 20.242 kb on - strand, within GFF7060 at 20.242 kb on - strand, within GFF7060 at 20.379 kb on + strand, within GFF7060 at 20.379 kb on + strand, within GFF7060 at 20.379 kb on + strand, within GFF7060 at 20.379 kb on + strand, within GFF7060 at 20.380 kb on - strand, within GFF7060 at 20.380 kb on - strand, within GFF7060 at 20.380 kb on - strand, within GFF7060 at 20.444 kb on + strand, within GFF7060 at 20.444 kb on + strand, within GFF7060 at 20.445 kb on - strand, within GFF7060 at 20.445 kb on - strand, within GFF7060 at 20.448 kb on + strand, within GFF7060 at 20.448 kb on + strand, within GFF7060 at 20.449 kb on - strand, within GFF7060 at 20.449 kb on - strand, within GFF7060 at 20.449 kb on - strand, within GFF7060 at 20.449 kb on - strand, within GFF7060 at 20.449 kb on - strand, within GFF7060 at 20.640 kb on + strand, within GFF7060 at 20.640 kb on + strand, within GFF7060 at 20.641 kb on - strand, within GFF7060 at 20.641 kb on - strand, within GFF7060 at 20.641 kb on - strand, within GFF7060 at 20.641 kb on - strand, within GFF7060 at 20.641 kb on - strand, within GFF7060 at 20.835 kb on + strand at 20.836 kb on - strand at 20.836 kb on - strand at 20.883 kb on + strand at 20.883 kb on + strand at 20.883 kb on + strand at 20.883 kb on + strand at 20.884 kb on - strand at 21.186 kb on + strand, within GFF7061 at 21.313 kb on + strand at 21.340 kb on + strand at 21.340 kb on + strand at 21.341 kb on - strand at 21.341 kb on - strand at 21.378 kb on - strand at 21.378 kb on - strand at 21.545 kb on - strand, within GFF7062 at 21.562 kb on + strand, within GFF7062 at 21.563 kb on - strand, within GFF7062 at 21.563 kb on - strand, within GFF7062 at 21.563 kb on - strand, within GFF7062 at 21.563 kb on - strand, within GFF7062 at 21.778 kb on + strand, within GFF7062 at 21.779 kb on - strand, within GFF7062
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 19,234 + +0.9 19,235 - -0.2 19,235 - -0.0 19,235 - -0.5 19,235 - -0.1 19,540 + GFF7059 0.61 -0.3 19,789 + -0.9 19,790 - +1.5 19,805 + -0.1 19,805 + +0.2 19,918 + -0.9 19,949 - +0.2 19,993 - GFF7060 0.10 -2.0 20,027 + GFF7060 0.14 -0.1 20,028 - GFF7060 0.14 -0.1 20,176 - GFF7060 0.29 -1.1 20,242 - GFF7060 0.35 -0.9 20,242 - GFF7060 0.35 -1.1 20,242 - GFF7060 0.35 -0.1 20,379 + GFF7060 0.49 -0.5 20,379 + GFF7060 0.49 -0.8 20,379 + GFF7060 0.49 -0.2 20,379 + GFF7060 0.49 -0.9 20,380 - GFF7060 0.49 +0.1 20,380 - GFF7060 0.49 -0.2 20,380 - GFF7060 0.49 -0.2 20,444 + GFF7060 0.56 -0.6 20,444 + GFF7060 0.56 -0.4 20,445 - GFF7060 0.56 -1.4 20,445 - GFF7060 0.56 -0.5 20,448 + GFF7060 0.56 -0.4 20,448 + GFF7060 0.56 -0.4 20,449 - GFF7060 0.56 -0.7 20,449 - GFF7060 0.56 +0.6 20,449 - GFF7060 0.56 -1.9 20,449 - GFF7060 0.56 -0.1 20,449 - GFF7060 0.56 +1.8 20,640 + GFF7060 0.75 +0.6 20,640 + GFF7060 0.75 -0.8 20,641 - GFF7060 0.75 -0.1 20,641 - GFF7060 0.75 +0.5 20,641 - GFF7060 0.75 +0.3 20,641 - GFF7060 0.75 +0.2 20,641 - GFF7060 0.75 +0.1 20,835 + +0.6 20,836 - +0.7 20,836 - -1.3 20,883 + +0.7 20,883 + -0.8 20,883 + -0.5 20,883 + -0.8 20,884 - +0.5 21,186 + GFF7061 0.84 -0.1 21,313 + -0.1 21,340 + +0.8 21,340 + +0.7 21,341 - -0.4 21,341 - -0.3 21,378 - +0.6 21,378 - -0.1 21,545 - GFF7062 0.29 -0.5 21,562 + GFF7062 0.31 +1.5 21,563 - GFF7062 0.31 -0.2 21,563 - GFF7062 0.31 -0.1 21,563 - GFF7062 0.31 -0.6 21,563 - GFF7062 0.31 -0.5 21,778 + GFF7062 0.64 -0.4 21,779 - GFF7062 0.64 +0.6
Or see this region's nucleotide sequence