Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF705 and GFF706 are separated by 370 nucleotides GFF706 and GFF707 overlap by 4 nucleotides
GFF705 - Transcriptional regulator, AcrR family, at 761,778 to 762,359
GFF705
GFF706 - hypothetical protein, at 762,730 to 764,142
GFF706
GFF707 - probable integral membrane protein NMA1898, at 764,139 to 765,566
GFF707
Position (kb) 762
763
764
765 Strain fitness (log2 ratio) -2
-1
0
1
2 at 761.737 kb on - strand at 761.744 kb on - strand at 761.749 kb on - strand at 761.784 kb on - strand at 761.784 kb on - strand at 761.784 kb on - strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.859 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.920 kb on - strand, within GFF705 at 761.920 kb on - strand, within GFF705 at 761.920 kb on - strand, within GFF705 at 762.057 kb on + strand, within GFF705 at 762.058 kb on - strand, within GFF705 at 762.058 kb on - strand, within GFF705 at 762.390 kb on + strand at 762.391 kb on - strand at 762.391 kb on - strand at 762.436 kb on + strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.525 kb on - strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.679 kb on + strand at 762.679 kb on + strand at 762.680 kb on - strand at 762.680 kb on - strand at 762.680 kb on - strand at 762.788 kb on + strand at 762.789 kb on - strand at 763.360 kb on + strand, within GFF706 at 763.361 kb on - strand, within GFF706 at 763.546 kb on + strand, within GFF706 at 763.547 kb on - strand, within GFF706 at 763.639 kb on + strand, within GFF706 at 763.639 kb on + strand, within GFF706 at 763.640 kb on - strand, within GFF706 at 763.640 kb on - strand, within GFF706 at 763.640 kb on - strand, within GFF706 at 763.643 kb on - strand, within GFF706 at 763.643 kb on - strand, within GFF706 at 764.659 kb on - strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.725 kb on - strand, within GFF707 at 764.725 kb on - strand, within GFF707 at 764.725 kb on - strand, within GFF707 at 764.986 kb on - strand, within GFF707 at 764.986 kb on - strand, within GFF707
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 761,737 - +0.2 761,744 - +0.5 761,749 - -1.4 761,784 - -0.5 761,784 - -0.7 761,784 - -0.2 761,824 + +0.5 761,824 + +0.2 761,824 + -1.3 761,824 + -0.7 761,824 + -0.3 761,824 + -0.7 761,825 - -0.1 761,825 - -0.0 761,825 - -1.0 761,825 - -0.7 761,825 - -0.0 761,825 - -0.3 761,859 + GFF705 0.14 -0.3 761,919 + GFF705 0.24 +0.5 761,919 + GFF705 0.24 +1.0 761,919 + GFF705 0.24 -0.7 761,919 + GFF705 0.24 +0.3 761,920 - GFF705 0.24 -0.8 761,920 - GFF705 0.24 -0.2 761,920 - GFF705 0.24 -0.3 762,057 + GFF705 0.48 +0.3 762,058 - GFF705 0.48 -0.4 762,058 - GFF705 0.48 -1.2 762,390 + -0.1 762,391 - +0.5 762,391 - -0.6 762,436 + +0.1 762,437 - +0.5 762,437 - +1.3 762,437 - +0.1 762,437 - +0.5 762,437 - -0.6 762,437 - -0.0 762,437 - -0.2 762,525 - +0.2 762,533 + +0.2 762,533 + -0.2 762,533 + -0.3 762,533 + -0.3 762,533 + -0.0 762,533 + +1.3 762,534 - +1.3 762,534 - -0.5 762,534 - +0.2 762,534 - -1.3 762,534 - -2.3 762,534 - -0.2 762,534 - -0.1 762,679 + -1.3 762,679 + -0.4 762,680 - +0.6 762,680 - +0.1 762,680 - +1.8 762,788 + -0.1 762,789 - -1.8 763,360 + GFF706 0.45 -1.7 763,361 - GFF706 0.45 -0.1 763,546 + GFF706 0.58 -0.6 763,547 - GFF706 0.58 -0.5 763,639 + GFF706 0.64 +0.8 763,639 + GFF706 0.64 -0.9 763,640 - GFF706 0.64 +0.3 763,640 - GFF706 0.64 -0.2 763,640 - GFF706 0.64 -1.3 763,643 - GFF706 0.65 -1.2 763,643 - GFF706 0.65 +0.3 764,659 - GFF707 0.36 -0.6 764,724 + GFF707 0.41 +0.5 764,724 + GFF707 0.41 +0.6 764,724 + GFF707 0.41 +0.4 764,724 + GFF707 0.41 -1.0 764,724 + GFF707 0.41 -0.1 764,724 + GFF707 0.41 -0.3 764,724 + GFF707 0.41 -0.2 764,724 + GFF707 0.41 -0.1 764,724 + GFF707 0.41 -0.8 764,725 - GFF707 0.41 -1.3 764,725 - GFF707 0.41 -0.1 764,725 - GFF707 0.41 -0.1 764,986 - GFF707 0.59 -0.6 764,986 - GFF707 0.59 +0.6
Or see this region's nucleotide sequence