Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7053 and GFF7054 are separated by 0 nucleotides GFF7054 and GFF7055 are separated by 82 nucleotides
GFF7053 - Transcriptional regulator, LysR family, at 13,624 to 14,526
GFF7053
GFF7054 - Glutathione S-transferase domain protein, at 14,527 to 15,174
GFF7054
GFF7055 - hypothetical protein, at 15,257 to 16,135
GFF7055
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 13.538 kb on + strand at 13.539 kb on - strand at 13.539 kb on - strand at 13.539 kb on - strand at 13.562 kb on + strand at 13.562 kb on + strand at 13.562 kb on + strand at 13.562 kb on + strand at 13.562 kb on + strand at 13.563 kb on - strand at 13.563 kb on - strand at 13.563 kb on - strand at 13.563 kb on - strand at 13.563 kb on - strand at 13.563 kb on - strand at 13.563 kb on - strand at 13.563 kb on - strand at 13.593 kb on - strand at 13.603 kb on + strand at 13.724 kb on - strand, within GFF7053 at 14.041 kb on + strand, within GFF7053 at 14.330 kb on - strand, within GFF7053 at 14.330 kb on - strand, within GFF7053 at 14.524 kb on + strand at 14.524 kb on + strand at 14.525 kb on - strand at 14.525 kb on - strand at 14.525 kb on - strand at 14.525 kb on - strand at 14.528 kb on + strand at 14.528 kb on + strand at 14.528 kb on + strand at 14.528 kb on + strand at 14.528 kb on + strand at 14.528 kb on + strand at 14.528 kb on + strand at 14.528 kb on + strand at 14.529 kb on - strand at 14.529 kb on - strand at 14.529 kb on - strand at 14.529 kb on - strand at 14.529 kb on - strand at 14.529 kb on - strand at 14.529 kb on - strand at 14.529 kb on - strand at 14.568 kb on - strand at 14.568 kb on - strand at 14.828 kb on + strand, within GFF7054 at 14.834 kb on + strand, within GFF7054 at 14.835 kb on - strand, within GFF7054 at 15.125 kb on + strand at 15.126 kb on - strand at 15.126 kb on - strand at 15.126 kb on - strand at 15.390 kb on - strand, within GFF7055 at 16.031 kb on + strand, within GFF7055 at 16.145 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 13,538 + -0.3 13,539 - -0.7 13,539 - +0.0 13,539 - +2.0 13,562 + +0.0 13,562 + -0.2 13,562 + +0.1 13,562 + +0.3 13,562 + +0.9 13,563 - +0.6 13,563 - +0.5 13,563 - -0.2 13,563 - +0.3 13,563 - -0.5 13,563 - -0.4 13,563 - +0.1 13,563 - -0.1 13,593 - +0.0 13,603 + -0.2 13,724 - GFF7053 0.11 +0.1 14,041 + GFF7053 0.46 -0.5 14,330 - GFF7053 0.78 +0.2 14,330 - GFF7053 0.78 -0.3 14,524 + +1.5 14,524 + +0.5 14,525 - +1.2 14,525 - +1.0 14,525 - -1.1 14,525 - +0.8 14,528 + +3.0 14,528 + +0.2 14,528 + -0.3 14,528 + -0.1 14,528 + +0.0 14,528 + +0.3 14,528 + +0.1 14,528 + +0.5 14,529 - +0.2 14,529 - -1.4 14,529 - -0.1 14,529 - +0.3 14,529 - +0.9 14,529 - +0.7 14,529 - -0.5 14,529 - -0.5 14,568 - +0.1 14,568 - -0.1 14,828 + GFF7054 0.46 +0.1 14,834 + GFF7054 0.47 -0.6 14,835 - GFF7054 0.48 -0.7 15,125 + -2.5 15,126 - -0.2 15,126 - -0.0 15,126 - -0.1 15,390 - GFF7055 0.15 -1.5 16,031 + GFF7055 0.88 -1.9 16,145 - -2.2
Or see this region's nucleotide sequence