Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7017 and GFF7018 are separated by 12 nucleotides GFF7018 and GFF7019 overlap by 4 nucleotides GFF7019 and GFF7020 are separated by 150 nucleotides
GFF7017 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 33,364 to 34,977
GFF7017
GFF7018 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 34,990 to 35,976
GFF7018
GFF7019 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 35,973 to 36,884
GFF7019
GFF7020 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 37,035 to 38,087
GFF7020
Position (kb) 35
36
37 Strain fitness (log2 ratio) -1
0
1 at 35.251 kb on + strand, within GFF7018 at 35.252 kb on - strand, within GFF7018 at 35.252 kb on - strand, within GFF7018 at 35.714 kb on - strand, within GFF7018 at 36.234 kb on + strand, within GFF7019 at 36.235 kb on - strand, within GFF7019 at 36.541 kb on - strand, within GFF7019 at 36.541 kb on - strand, within GFF7019 at 36.759 kb on + strand, within GFF7019 at 36.759 kb on + strand, within GFF7019 at 36.760 kb on - strand, within GFF7019 at 37.026 kb on + strand at 37.409 kb on - strand, within GFF7020 at 37.576 kb on + strand, within GFF7020 at 37.737 kb on + strand, within GFF7020 at 37.738 kb on - strand, within GFF7020 at 37.800 kb on + strand, within GFF7020
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 35,251 + GFF7018 0.26 +0.7 35,252 - GFF7018 0.27 -1.0 35,252 - GFF7018 0.27 -0.1 35,714 - GFF7018 0.73 -1.4 36,234 + GFF7019 0.29 -0.5 36,235 - GFF7019 0.29 -0.1 36,541 - GFF7019 0.62 -0.6 36,541 - GFF7019 0.62 +0.2 36,759 + GFF7019 0.86 +0.0 36,759 + GFF7019 0.86 -1.6 36,760 - GFF7019 0.86 -1.0 37,026 + -0.7 37,409 - GFF7020 0.36 +0.2 37,576 + GFF7020 0.51 +0.7 37,737 + GFF7020 0.67 -0.1 37,738 - GFF7020 0.67 -0.1 37,800 + GFF7020 0.73 +0.8
Or see this region's nucleotide sequence