Strain Fitness in Variovorax sp. SCN45 around GFF6951

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6949 and GFF6950 are separated by 1 nucleotidesGFF6950 and GFF6951 are separated by 99 nucleotidesGFF6951 and GFF6952 are separated by 21 nucleotides GFF6949 - no description, at 25,666 to 26,319 GFF6949 GFF6950 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 26,321 to 27,040 GFF6950 GFF6951 - Alcohol dehydrogenase (EC 1.1.1.1), at 27,140 to 28,129 GFF6951 GFF6952 - Metallo-beta-lactamase family protein, RNA-specific, at 28,151 to 29,503 GFF6952 Position (kb) 27 28 29Strain fitness (log2 ratio) -1 0 1at 26.252 kb on + strand, within GFF6949at 26.253 kb on - strand, within GFF6949at 26.756 kb on + strand, within GFF6950at 26.757 kb on - strand, within GFF6950at 26.757 kb on - strand, within GFF6950at 26.852 kb on + strand, within GFF6950at 26.853 kb on - strand, within GFF6950at 27.029 kb on + strandat 27.029 kb on + strandat 27.029 kb on + strandat 27.029 kb on + strandat 27.029 kb on + strandat 27.030 kb on - strandat 27.030 kb on - strandat 27.030 kb on - strandat 27.030 kb on - strandat 27.082 kb on + strandat 27.168 kb on + strandat 27.168 kb on + strandat 27.169 kb on - strandat 27.400 kb on - strand, within GFF6951at 27.459 kb on + strand, within GFF6951at 27.460 kb on - strand, within GFF6951at 27.643 kb on + strand, within GFF6951at 27.644 kb on - strand, within GFF6951at 27.644 kb on - strand, within GFF6951at 27.646 kb on - strand, within GFF6951at 27.646 kb on - strand, within GFF6951at 27.734 kb on - strand, within GFF6951at 27.734 kb on - strand, within GFF6951at 27.734 kb on - strand, within GFF6951at 27.734 kb on - strand, within GFF6951at 27.793 kb on + strand, within GFF6951at 28.049 kb on + strandat 28.050 kb on - strandat 28.368 kb on + strand, within GFF6952at 28.369 kb on - strand, within GFF6952at 28.369 kb on - strand, within GFF6952at 28.650 kb on + strand, within GFF6952at 28.650 kb on + strand, within GFF6952at 28.651 kb on - strand, within GFF6952at 28.659 kb on + strand, within GFF6952at 28.659 kb on + strand, within GFF6952at 28.660 kb on - strand, within GFF6952at 28.878 kb on + strand, within GFF6952at 28.878 kb on + strand, within GFF6952at 28.878 kb on + strand, within GFF6952at 28.879 kb on - strand, within GFF6952at 28.879 kb on - strand, within GFF6952at 28.879 kb on - strand, within GFF6952at 28.899 kb on + strand, within GFF6952at 28.899 kb on + strand, within GFF6952at 28.900 kb on - strand, within GFF6952at 28.900 kb on - strand, within GFF6952at 29.018 kb on + strand, within GFF6952at 29.018 kb on + strand, within GFF6952at 29.018 kb on + strand, within GFF6952at 29.018 kb on + strand, within GFF6952at 29.019 kb on - strand, within GFF6952at 29.019 kb on - strand, within GFF6952

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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26,252 + GFF6949 0.90 -0.1
26,253 - GFF6949 0.90 +0.3
26,756 + GFF6950 0.60 +0.2
26,757 - GFF6950 0.61 -0.4
26,757 - GFF6950 0.61 -0.5
26,852 + GFF6950 0.74 -0.9
26,853 - GFF6950 0.74 -0.1
27,029 + -0.2
27,029 + +0.0
27,029 + +0.2
27,029 + -0.1
27,029 + +0.2
27,030 - +0.8
27,030 - +0.2
27,030 - -0.4
27,030 - -0.4
27,082 + -1.0
27,168 + -0.8
27,168 + +1.0
27,169 - +0.6
27,400 - GFF6951 0.26 +1.2
27,459 + GFF6951 0.32 -0.5
27,460 - GFF6951 0.32 -0.9
27,643 + GFF6951 0.51 +0.1
27,644 - GFF6951 0.51 -0.9
27,644 - GFF6951 0.51 -0.5
27,646 - GFF6951 0.51 -0.7
27,646 - GFF6951 0.51 -1.5
27,734 - GFF6951 0.60 -0.8
27,734 - GFF6951 0.60 -0.7
27,734 - GFF6951 0.60 +0.2
27,734 - GFF6951 0.60 +0.6
27,793 + GFF6951 0.66 +0.5
28,049 + -1.1
28,050 - +0.7
28,368 + GFF6952 0.16 +0.2
28,369 - GFF6952 0.16 +0.4
28,369 - GFF6952 0.16 +0.2
28,650 + GFF6952 0.37 +0.1
28,650 + GFF6952 0.37 -1.2
28,651 - GFF6952 0.37 -0.1
28,659 + GFF6952 0.38 -0.5
28,659 + GFF6952 0.38 -1.4
28,660 - GFF6952 0.38 -0.8
28,878 + GFF6952 0.54 +0.6
28,878 + GFF6952 0.54 +0.3
28,878 + GFF6952 0.54 +0.1
28,879 - GFF6952 0.54 -0.3
28,879 - GFF6952 0.54 -0.9
28,879 - GFF6952 0.54 -0.4
28,899 + GFF6952 0.55 +0.0
28,899 + GFF6952 0.55 -0.3
28,900 - GFF6952 0.55 +0.1
28,900 - GFF6952 0.55 -0.5
29,018 + GFF6952 0.64 -0.6
29,018 + GFF6952 0.64 +0.4
29,018 + GFF6952 0.64 -0.1
29,018 + GFF6952 0.64 -0.1
29,019 - GFF6952 0.64 +0.6
29,019 - GFF6952 0.64 +0.1

Or see this region's nucleotide sequence