Strain Fitness in Variovorax sp. SCN45 around GFF6904

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6903 and GFF6904 are separated by 85 nucleotidesGFF6904 and GFF6905 are separated by 1 nucleotides GFF6903 - Transcriptional regulator, LysR family, at 38,008 to 38,916 GFF6903 GFF6904 - Zinc-type alcohol dehydrogenase-like protein, at 39,002 to 40,012 GFF6904 GFF6905 - Chloride channel protein, at 40,014 to 41,783 GFF6905 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 38.399 kb on + strand, within GFF6903at 38.399 kb on + strand, within GFF6903at 38.399 kb on + strand, within GFF6903at 38.400 kb on - strand, within GFF6903at 38.400 kb on - strand, within GFF6903at 38.400 kb on - strand, within GFF6903at 38.478 kb on - strand, within GFF6903at 38.985 kb on - strandat 38.985 kb on - strandat 39.017 kb on + strandat 39.018 kb on - strandat 39.020 kb on + strandat 39.020 kb on + strandat 39.020 kb on + strandat 39.020 kb on + strandat 39.021 kb on - strandat 39.021 kb on - strandat 39.021 kb on - strandat 39.263 kb on + strand, within GFF6904at 39.264 kb on - strand, within GFF6904at 39.264 kb on - strand, within GFF6904at 39.266 kb on + strand, within GFF6904at 39.266 kb on + strand, within GFF6904at 39.266 kb on + strand, within GFF6904at 39.267 kb on - strand, within GFF6904at 39.267 kb on - strand, within GFF6904at 39.267 kb on - strand, within GFF6904at 39.267 kb on - strand, within GFF6904at 39.267 kb on - strand, within GFF6904at 39.398 kb on + strand, within GFF6904at 39.398 kb on + strand, within GFF6904at 39.398 kb on + strand, within GFF6904at 39.399 kb on - strand, within GFF6904at 39.399 kb on - strand, within GFF6904at 39.689 kb on + strand, within GFF6904at 39.689 kb on + strand, within GFF6904at 40.010 kb on + strandat 40.010 kb on + strandat 40.010 kb on + strandat 40.010 kb on + strandat 40.011 kb on - strandat 40.011 kb on - strandat 40.011 kb on - strandat 40.011 kb on - strandat 40.015 kb on + strandat 40.016 kb on - strandat 40.016 kb on - strandat 40.016 kb on - strandat 40.222 kb on + strand, within GFF6905at 40.222 kb on + strand, within GFF6905at 40.223 kb on - strand, within GFF6905at 40.223 kb on - strand, within GFF6905at 40.369 kb on + strand, within GFF6905at 40.369 kb on + strand, within GFF6905at 40.369 kb on + strand, within GFF6905at 40.472 kb on - strand, within GFF6905at 40.480 kb on + strand, within GFF6905at 40.480 kb on + strand, within GFF6905at 40.480 kb on + strand, within GFF6905at 40.481 kb on - strand, within GFF6905at 40.481 kb on - strand, within GFF6905at 40.481 kb on - strand, within GFF6905at 40.552 kb on + strand, within GFF6905at 40.883 kb on - strand, within GFF6905at 40.883 kb on - strand, within GFF6905at 40.927 kb on - strand, within GFF6905at 40.999 kb on + strand, within GFF6905at 40.999 kb on + strand, within GFF6905at 40.999 kb on + strand, within GFF6905at 41.000 kb on - strand, within GFF6905at 41.000 kb on - strand, within GFF6905at 41.000 kb on - strand, within GFF6905

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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38,399 + GFF6903 0.43 -0.3
38,399 + GFF6903 0.43 -0.1
38,399 + GFF6903 0.43 +0.1
38,400 - GFF6903 0.43 +0.3
38,400 - GFF6903 0.43 -0.1
38,400 - GFF6903 0.43 -0.0
38,478 - GFF6903 0.52 -1.3
38,985 - -0.6
38,985 - +1.1
39,017 + -0.1
39,018 - +0.2
39,020 + +0.7
39,020 + +0.9
39,020 + +0.7
39,020 + -0.1
39,021 - +0.9
39,021 - +0.0
39,021 - -0.2
39,263 + GFF6904 0.26 -0.5
39,264 - GFF6904 0.26 -0.5
39,264 - GFF6904 0.26 +0.2
39,266 + GFF6904 0.26 -0.8
39,266 + GFF6904 0.26 -1.0
39,266 + GFF6904 0.26 -0.3
39,267 - GFF6904 0.26 -0.1
39,267 - GFF6904 0.26 -0.8
39,267 - GFF6904 0.26 -0.1
39,267 - GFF6904 0.26 -0.5
39,267 - GFF6904 0.26 -0.8
39,398 + GFF6904 0.39 -0.6
39,398 + GFF6904 0.39 -0.1
39,398 + GFF6904 0.39 -0.3
39,399 - GFF6904 0.39 +2.1
39,399 - GFF6904 0.39 -1.1
39,689 + GFF6904 0.68 -0.2
39,689 + GFF6904 0.68 +0.1
40,010 + +0.0
40,010 + +1.3
40,010 + +0.0
40,010 + -0.3
40,011 - -0.1
40,011 - +0.8
40,011 - -1.1
40,011 - -0.4
40,015 + -2.1
40,016 - -0.1
40,016 - -0.3
40,016 - +0.0
40,222 + GFF6905 0.12 -0.2
40,222 + GFF6905 0.12 -1.1
40,223 - GFF6905 0.12 +1.7
40,223 - GFF6905 0.12 -0.1
40,369 + GFF6905 0.20 -0.4
40,369 + GFF6905 0.20 -0.3
40,369 + GFF6905 0.20 -1.1
40,472 - GFF6905 0.26 -0.5
40,480 + GFF6905 0.26 +0.9
40,480 + GFF6905 0.26 +0.1
40,480 + GFF6905 0.26 -0.4
40,481 - GFF6905 0.26 -0.2
40,481 - GFF6905 0.26 +0.0
40,481 - GFF6905 0.26 -0.3
40,552 + GFF6905 0.30 -0.7
40,883 - GFF6905 0.49 +1.7
40,883 - GFF6905 0.49 +1.1
40,927 - GFF6905 0.52 +0.5
40,999 + GFF6905 0.56 -1.3
40,999 + GFF6905 0.56 +0.7
40,999 + GFF6905 0.56 -0.0
41,000 - GFF6905 0.56 -0.2
41,000 - GFF6905 0.56 -0.3
41,000 - GFF6905 0.56 -0.9

Or see this region's nucleotide sequence