Strain Fitness in Variovorax sp. SCN45 around GFF6838

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6837 and GFF6838 are separated by 97 nucleotidesGFF6838 and GFF6839 are separated by 123 nucleotides GFF6837 - BUG/TctC family periplasmic protein, at 21,164 to 22,132 GFF6837 GFF6838 - BUG/TctC family periplasmic protein, at 22,230 to 23,222 GFF6838 GFF6839 - hypothetical protein, at 23,346 to 24,131 GFF6839 Position (kb) 22 23 24Strain fitness (log2 ratio) -1 0 1 2at 21.441 kb on + strand, within GFF6837at 21.442 kb on - strand, within GFF6837at 21.501 kb on + strand, within GFF6837at 21.501 kb on + strand, within GFF6837at 21.501 kb on + strand, within GFF6837at 21.501 kb on + strand, within GFF6837at 21.501 kb on + strand, within GFF6837at 21.501 kb on + strand, within GFF6837at 21.501 kb on + strand, within GFF6837at 21.502 kb on - strand, within GFF6837at 21.502 kb on - strand, within GFF6837at 21.502 kb on - strand, within GFF6837at 21.585 kb on + strand, within GFF6837at 21.585 kb on + strand, within GFF6837at 21.585 kb on + strand, within GFF6837at 21.585 kb on + strand, within GFF6837at 21.586 kb on - strand, within GFF6837at 21.586 kb on - strand, within GFF6837at 21.586 kb on - strand, within GFF6837at 21.612 kb on + strand, within GFF6837at 21.612 kb on + strand, within GFF6837at 21.613 kb on - strand, within GFF6837at 21.613 kb on - strand, within GFF6837at 21.613 kb on - strand, within GFF6837at 21.729 kb on + strand, within GFF6837at 21.729 kb on + strand, within GFF6837at 21.729 kb on + strand, within GFF6837at 21.729 kb on + strand, within GFF6837at 21.729 kb on + strand, within GFF6837at 21.730 kb on - strand, within GFF6837at 21.730 kb on - strand, within GFF6837at 21.730 kb on - strand, within GFF6837at 21.730 kb on - strand, within GFF6837at 21.807 kb on + strand, within GFF6837at 21.807 kb on + strand, within GFF6837at 21.807 kb on + strand, within GFF6837at 21.807 kb on + strand, within GFF6837at 21.807 kb on + strand, within GFF6837at 21.807 kb on + strand, within GFF6837at 21.807 kb on + strand, within GFF6837at 21.807 kb on + strand, within GFF6837at 21.808 kb on - strand, within GFF6837at 21.808 kb on - strand, within GFF6837at 21.808 kb on - strand, within GFF6837at 21.808 kb on - strand, within GFF6837at 21.808 kb on - strand, within GFF6837at 21.808 kb on - strand, within GFF6837at 21.808 kb on - strand, within GFF6837at 21.808 kb on - strand, within GFF6837at 21.870 kb on + strand, within GFF6837at 21.871 kb on - strand, within GFF6837at 21.871 kb on - strand, within GFF6837at 22.154 kb on + strandat 22.154 kb on + strandat 22.154 kb on + strandat 22.154 kb on + strandat 22.154 kb on + strandat 22.154 kb on + strandat 22.155 kb on - strandat 22.155 kb on - strandat 22.155 kb on - strandat 22.155 kb on - strandat 22.155 kb on - strandat 22.155 kb on - strandat 22.155 kb on - strandat 22.155 kb on - strandat 22.155 kb on - strandat 22.155 kb on - strandat 22.162 kb on + strandat 22.162 kb on + strandat 22.162 kb on + strandat 22.162 kb on + strandat 22.162 kb on + strandat 22.163 kb on - strandat 22.163 kb on - strandat 22.163 kb on - strandat 22.163 kb on - strandat 22.163 kb on - strandat 22.163 kb on - strandat 22.163 kb on - strandat 22.163 kb on - strandat 22.270 kb on + strandat 22.465 kb on + strand, within GFF6838at 22.466 kb on - strand, within GFF6838at 22.508 kb on - strand, within GFF6838at 22.651 kb on + strand, within GFF6838at 22.651 kb on + strand, within GFF6838at 22.651 kb on + strand, within GFF6838at 22.651 kb on + strand, within GFF6838at 22.651 kb on + strand, within GFF6838at 22.652 kb on - strand, within GFF6838at 22.652 kb on - strand, within GFF6838at 22.652 kb on - strand, within GFF6838at 22.693 kb on + strand, within GFF6838at 22.693 kb on + strand, within GFF6838at 22.693 kb on + strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.825 kb on + strand, within GFF6838at 22.825 kb on + strand, within GFF6838at 22.825 kb on + strand, within GFF6838at 22.826 kb on - strand, within GFF6838at 22.826 kb on - strand, within GFF6838at 22.826 kb on - strand, within GFF6838at 22.888 kb on + strand, within GFF6838at 22.888 kb on + strand, within GFF6838at 22.888 kb on + strand, within GFF6838at 22.888 kb on + strand, within GFF6838at 22.889 kb on - strand, within GFF6838at 22.889 kb on - strand, within GFF6838at 22.909 kb on + strand, within GFF6838at 22.909 kb on + strand, within GFF6838at 22.909 kb on + strand, within GFF6838at 22.909 kb on + strand, within GFF6838at 22.909 kb on + strand, within GFF6838at 22.910 kb on - strand, within GFF6838at 22.910 kb on - strand, within GFF6838at 22.910 kb on - strand, within GFF6838at 22.910 kb on - strand, within GFF6838at 22.910 kb on - strand, within GFF6838at 22.910 kb on - strand, within GFF6838at 22.910 kb on - strand, within GFF6838at 22.936 kb on + strand, within GFF6838at 22.937 kb on - strand, within GFF6838at 23.216 kb on + strandat 23.216 kb on + strandat 23.217 kb on - strandat 23.318 kb on + strandat 23.318 kb on + strandat 23.367 kb on + strandat 23.416 kb on + strandat 23.416 kb on + strandat 23.417 kb on - strandat 23.417 kb on - strandat 23.424 kb on + strandat 23.424 kb on + strandat 23.425 kb on - strand, within GFF6839at 23.708 kb on - strand, within GFF6839at 24.058 kb on + strandat 24.058 kb on + strandat 24.059 kb on - strandat 24.059 kb on - strandat 24.059 kb on - strandat 24.210 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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21,441 + GFF6837 0.29 +0.3
21,442 - GFF6837 0.29 +0.2
21,501 + GFF6837 0.35 -0.5
21,501 + GFF6837 0.35 +0.6
21,501 + GFF6837 0.35 -0.5
21,501 + GFF6837 0.35 +0.3
21,501 + GFF6837 0.35 +0.1
21,501 + GFF6837 0.35 -0.7
21,501 + GFF6837 0.35 -0.0
21,502 - GFF6837 0.35 -1.0
21,502 - GFF6837 0.35 +0.0
21,502 - GFF6837 0.35 -0.6
21,585 + GFF6837 0.43 +0.5
21,585 + GFF6837 0.43 -1.4
21,585 + GFF6837 0.43 +0.6
21,585 + GFF6837 0.43 +0.6
21,586 - GFF6837 0.44 +0.3
21,586 - GFF6837 0.44 -0.8
21,586 - GFF6837 0.44 +0.1
21,612 + GFF6837 0.46 -1.0
21,612 + GFF6837 0.46 -1.2
21,613 - GFF6837 0.46 +1.3
21,613 - GFF6837 0.46 +1.3
21,613 - GFF6837 0.46 +1.3
21,729 + GFF6837 0.58 +0.9
21,729 + GFF6837 0.58 -0.3
21,729 + GFF6837 0.58 -0.6
21,729 + GFF6837 0.58 -0.9
21,729 + GFF6837 0.58 -0.6
21,730 - GFF6837 0.58 +0.1
21,730 - GFF6837 0.58 -1.7
21,730 - GFF6837 0.58 -0.5
21,730 - GFF6837 0.58 +0.7
21,807 + GFF6837 0.66 +1.3
21,807 + GFF6837 0.66 -0.8
21,807 + GFF6837 0.66 -0.7
21,807 + GFF6837 0.66 +0.9
21,807 + GFF6837 0.66 -1.1
21,807 + GFF6837 0.66 -0.8
21,807 + GFF6837 0.66 +1.1
21,807 + GFF6837 0.66 -0.1
21,808 - GFF6837 0.66 -0.1
21,808 - GFF6837 0.66 +0.6
21,808 - GFF6837 0.66 -0.5
21,808 - GFF6837 0.66 +1.2
21,808 - GFF6837 0.66 -0.4
21,808 - GFF6837 0.66 -0.2
21,808 - GFF6837 0.66 +0.3
21,808 - GFF6837 0.66 -1.2
21,870 + GFF6837 0.73 +0.3
21,871 - GFF6837 0.73 -1.7
21,871 - GFF6837 0.73 +0.7
22,154 + -0.7
22,154 + -0.3
22,154 + -0.2
22,154 + -0.4
22,154 + -1.5
22,154 + -0.0
22,155 - +0.8
22,155 - +0.1
22,155 - -1.1
22,155 - -0.9
22,155 - -0.5
22,155 - -0.7
22,155 - +0.0
22,155 - +0.6
22,155 - -0.5
22,155 - -0.4
22,162 + -0.2
22,162 + +0.7
22,162 + -0.6
22,162 + -1.3
22,162 + -0.2
22,163 - -1.2
22,163 - +0.2
22,163 - -0.1
22,163 - +0.3
22,163 - -0.6
22,163 - -0.3
22,163 - +0.1
22,163 - +0.3
22,270 + +0.2
22,465 + GFF6838 0.24 -0.5
22,466 - GFF6838 0.24 -0.6
22,508 - GFF6838 0.28 -0.4
22,651 + GFF6838 0.42 +0.2
22,651 + GFF6838 0.42 -0.1
22,651 + GFF6838 0.42 +0.5
22,651 + GFF6838 0.42 +0.8
22,651 + GFF6838 0.42 +0.6
22,652 - GFF6838 0.42 -0.8
22,652 - GFF6838 0.42 +0.8
22,652 - GFF6838 0.42 +1.2
22,693 + GFF6838 0.47 -0.8
22,693 + GFF6838 0.47 +0.4
22,693 + GFF6838 0.47 +0.1
22,694 - GFF6838 0.47 -0.8
22,694 - GFF6838 0.47 -0.0
22,694 - GFF6838 0.47 -0.0
22,694 - GFF6838 0.47 -0.2
22,694 - GFF6838 0.47 -0.3
22,694 - GFF6838 0.47 -0.6
22,694 - GFF6838 0.47 -0.4
22,694 - GFF6838 0.47 +0.6
22,694 - GFF6838 0.47 -0.7
22,694 - GFF6838 0.47 +0.9
22,825 + GFF6838 0.60 -0.1
22,825 + GFF6838 0.60 +1.9
22,825 + GFF6838 0.60 -0.6
22,826 - GFF6838 0.60 -0.2
22,826 - GFF6838 0.60 +0.4
22,826 - GFF6838 0.60 -0.3
22,888 + GFF6838 0.66 +0.0
22,888 + GFF6838 0.66 -0.1
22,888 + GFF6838 0.66 -0.1
22,888 + GFF6838 0.66 +1.7
22,889 - GFF6838 0.66 -0.6
22,889 - GFF6838 0.66 -0.3
22,909 + GFF6838 0.68 -0.8
22,909 + GFF6838 0.68 +0.0
22,909 + GFF6838 0.68 -0.5
22,909 + GFF6838 0.68 -0.2
22,909 + GFF6838 0.68 +0.0
22,910 - GFF6838 0.68 -0.3
22,910 - GFF6838 0.68 -0.5
22,910 - GFF6838 0.68 -0.1
22,910 - GFF6838 0.68 +1.4
22,910 - GFF6838 0.68 -0.6
22,910 - GFF6838 0.68 +0.0
22,910 - GFF6838 0.68 -0.0
22,936 + GFF6838 0.71 +0.2
22,937 - GFF6838 0.71 +0.4
23,216 + +0.3
23,216 + -1.5
23,217 - +0.1
23,318 + -0.2
23,318 + +0.2
23,367 + +0.1
23,416 + -0.2
23,416 + -0.2
23,417 - +0.1
23,417 - +1.1
23,424 + +0.3
23,424 + +0.9
23,425 - GFF6839 0.10 -0.5
23,708 - GFF6839 0.46 +0.6
24,058 + -0.9
24,058 + -0.0
24,059 - -0.7
24,059 - +0.2
24,059 - -0.6
24,210 - -0.1

Or see this region's nucleotide sequence