Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6827 and GFF6828 are separated by 85 nucleotides GFF6828 and GFF6829 are separated by 27 nucleotides GFF6829 and GFF6830 are separated by 94 nucleotides
GFF6827 - Glutamine amidotransferase, class I, at 12,700 to 13,440
GFF6827
GFF6828 - CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8), at 13,526 to 14,164
GFF6828
GFF6829 - Glutathione S-transferase (EC 2.5.1.18), at 14,192 to 14,773
GFF6829
GFF6830 - penicillin amidase family protein, at 14,868 to 17,288
GFF6830
Position (kb) 14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 13.300 kb on + strand, within GFF6827 at 13.301 kb on - strand, within GFF6827 at 13.301 kb on - strand, within GFF6827 at 13.457 kb on + strand at 13.457 kb on + strand at 13.458 kb on - strand at 13.458 kb on - strand at 13.483 kb on - strand at 13.880 kb on + strand, within GFF6828 at 13.880 kb on + strand, within GFF6828 at 13.881 kb on - strand, within GFF6828 at 13.916 kb on + strand, within GFF6828 at 13.916 kb on + strand, within GFF6828 at 13.917 kb on - strand, within GFF6828 at 13.917 kb on - strand, within GFF6828 at 13.917 kb on - strand, within GFF6828 at 13.917 kb on - strand, within GFF6828 at 13.959 kb on + strand, within GFF6828 at 13.959 kb on + strand, within GFF6828 at 13.959 kb on + strand, within GFF6828 at 13.959 kb on + strand, within GFF6828 at 13.959 kb on + strand, within GFF6828 at 13.959 kb on + strand, within GFF6828 at 13.960 kb on - strand, within GFF6828 at 13.960 kb on - strand, within GFF6828 at 13.960 kb on - strand, within GFF6828 at 13.960 kb on - strand, within GFF6828 at 13.960 kb on - strand, within GFF6828 at 13.960 kb on - strand, within GFF6828 at 13.964 kb on + strand, within GFF6828 at 13.964 kb on + strand, within GFF6828 at 14.207 kb on + strand at 14.207 kb on + strand at 14.207 kb on + strand at 14.207 kb on + strand at 14.208 kb on - strand at 14.208 kb on - strand at 14.271 kb on - strand, within GFF6829 at 14.271 kb on - strand, within GFF6829 at 14.321 kb on + strand, within GFF6829 at 14.322 kb on - strand, within GFF6829 at 14.322 kb on - strand, within GFF6829 at 14.405 kb on + strand, within GFF6829 at 14.405 kb on + strand, within GFF6829 at 14.405 kb on + strand, within GFF6829 at 14.405 kb on + strand, within GFF6829 at 14.405 kb on + strand, within GFF6829 at 14.405 kb on + strand, within GFF6829 at 14.405 kb on + strand, within GFF6829 at 14.405 kb on + strand, within GFF6829 at 14.405 kb on + strand, within GFF6829 at 14.405 kb on + strand, within GFF6829 at 14.405 kb on + strand, within GFF6829 at 14.405 kb on + strand, within GFF6829 at 14.405 kb on + strand, within GFF6829 at 14.406 kb on - strand, within GFF6829 at 14.406 kb on - strand, within GFF6829 at 14.406 kb on - strand, within GFF6829 at 14.471 kb on + strand, within GFF6829 at 14.471 kb on + strand, within GFF6829 at 14.471 kb on + strand, within GFF6829 at 14.472 kb on - strand, within GFF6829 at 14.472 kb on - strand, within GFF6829 at 14.489 kb on + strand, within GFF6829 at 14.489 kb on + strand, within GFF6829 at 14.489 kb on + strand, within GFF6829 at 14.489 kb on + strand, within GFF6829 at 14.490 kb on - strand, within GFF6829 at 14.490 kb on - strand, within GFF6829 at 14.621 kb on + strand, within GFF6829 at 14.622 kb on - strand, within GFF6829 at 14.726 kb on + strand at 14.726 kb on + strand at 14.726 kb on + strand at 14.726 kb on + strand at 14.726 kb on + strand at 14.727 kb on - strand at 14.727 kb on - strand at 14.727 kb on - strand at 14.727 kb on - strand at 15.040 kb on - strand at 15.040 kb on - strand at 15.040 kb on - strand at 15.040 kb on - strand at 15.040 kb on - strand at 15.040 kb on - strand at 15.055 kb on - strand at 15.067 kb on - strand at 15.214 kb on - strand, within GFF6830 at 15.288 kb on + strand, within GFF6830 at 15.289 kb on - strand, within GFF6830 at 15.289 kb on - strand, within GFF6830 at 15.300 kb on + strand, within GFF6830 at 15.300 kb on + strand, within GFF6830 at 15.300 kb on + strand, within GFF6830 at 15.301 kb on - strand, within GFF6830 at 15.309 kb on + strand, within GFF6830 at 15.309 kb on + strand, within GFF6830 at 15.309 kb on + strand, within GFF6830 at 15.310 kb on - strand, within GFF6830 at 15.376 kb on + strand, within GFF6830 at 15.377 kb on - strand, within GFF6830
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 13,300 + GFF6827 0.81 +0.1 13,301 - GFF6827 0.81 -0.8 13,301 - GFF6827 0.81 -0.9 13,457 + +0.1 13,457 + +0.3 13,458 - -0.0 13,458 - -0.2 13,483 - -1.0 13,880 + GFF6828 0.55 -0.8 13,880 + GFF6828 0.55 -0.6 13,881 - GFF6828 0.56 +0.8 13,916 + GFF6828 0.61 -1.3 13,916 + GFF6828 0.61 -0.2 13,917 - GFF6828 0.61 +0.2 13,917 - GFF6828 0.61 -0.0 13,917 - GFF6828 0.61 +0.0 13,917 - GFF6828 0.61 -0.3 13,959 + GFF6828 0.68 +0.5 13,959 + GFF6828 0.68 -0.2 13,959 + GFF6828 0.68 -0.0 13,959 + GFF6828 0.68 +0.9 13,959 + GFF6828 0.68 +0.4 13,959 + GFF6828 0.68 -0.1 13,960 - GFF6828 0.68 -0.1 13,960 - GFF6828 0.68 -0.0 13,960 - GFF6828 0.68 +1.7 13,960 - GFF6828 0.68 -0.5 13,960 - GFF6828 0.68 -0.4 13,960 - GFF6828 0.68 +0.2 13,964 + GFF6828 0.69 -1.0 13,964 + GFF6828 0.69 -1.2 14,207 + -0.1 14,207 + -0.4 14,207 + +0.8 14,207 + -0.2 14,208 - -0.3 14,208 - -1.4 14,271 - GFF6829 0.14 -0.3 14,271 - GFF6829 0.14 -0.2 14,321 + GFF6829 0.22 -0.4 14,322 - GFF6829 0.22 -0.1 14,322 - GFF6829 0.22 -0.1 14,405 + GFF6829 0.37 -0.1 14,405 + GFF6829 0.37 -2.0 14,405 + GFF6829 0.37 -0.8 14,405 + GFF6829 0.37 -0.4 14,405 + GFF6829 0.37 +1.2 14,405 + GFF6829 0.37 +0.5 14,405 + GFF6829 0.37 -0.6 14,405 + GFF6829 0.37 -0.5 14,405 + GFF6829 0.37 -1.0 14,405 + GFF6829 0.37 -0.2 14,405 + GFF6829 0.37 -0.7 14,405 + GFF6829 0.37 -1.5 14,405 + GFF6829 0.37 -1.5 14,406 - GFF6829 0.37 -0.6 14,406 - GFF6829 0.37 +0.0 14,406 - GFF6829 0.37 -0.2 14,471 + GFF6829 0.48 +0.2 14,471 + GFF6829 0.48 +0.1 14,471 + GFF6829 0.48 -0.3 14,472 - GFF6829 0.48 -2.0 14,472 - GFF6829 0.48 -0.5 14,489 + GFF6829 0.51 -0.2 14,489 + GFF6829 0.51 +0.0 14,489 + GFF6829 0.51 -0.3 14,489 + GFF6829 0.51 -1.2 14,490 - GFF6829 0.51 +0.3 14,490 - GFF6829 0.51 -0.7 14,621 + GFF6829 0.74 -3.2 14,622 - GFF6829 0.74 -0.4 14,726 + +0.6 14,726 + -1.7 14,726 + -0.2 14,726 + +1.3 14,726 + -0.0 14,727 - +0.3 14,727 - -0.2 14,727 - -0.2 14,727 - +0.8 15,040 - -0.2 15,040 - -0.2 15,040 - +2.1 15,040 - +0.3 15,040 - +0.3 15,040 - -0.6 15,055 - -0.1 15,067 - +0.5 15,214 - GFF6830 0.14 +0.6 15,288 + GFF6830 0.17 -1.2 15,289 - GFF6830 0.17 -0.6 15,289 - GFF6830 0.17 +0.4 15,300 + GFF6830 0.18 -0.3 15,300 + GFF6830 0.18 +0.2 15,300 + GFF6830 0.18 -0.8 15,301 - GFF6830 0.18 -0.7 15,309 + GFF6830 0.18 -0.2 15,309 + GFF6830 0.18 +0.1 15,309 + GFF6830 0.18 +0.1 15,310 - GFF6830 0.18 -0.2 15,376 + GFF6830 0.21 -0.2 15,377 - GFF6830 0.21 +0.5
Or see this region's nucleotide sequence