Strain Fitness in Variovorax sp. SCN45 around GFF6767

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6766 and GFF6767 are separated by 45 nucleotidesGFF6767 and GFF6768 are separated by 12 nucleotidesGFF6768 and GFF6769 are separated by 150 nucleotides GFF6766 - MATE efflux family protein, at 12,767 to 14,188 GFF6766 GFF6767 - no description, at 14,234 to 14,944 GFF6767 GFF6768 - hypothetical protein, at 14,957 to 15,271 GFF6768 GFF6769 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 15,422 to 16,159 GFF6769 Position (kb) 14 15Strain fitness (log2 ratio) -2 -1 0 1 2at 13.412 kb on + strand, within GFF6766at 13.412 kb on + strand, within GFF6766at 13.412 kb on + strand, within GFF6766at 13.412 kb on + strand, within GFF6766at 13.413 kb on - strand, within GFF6766at 13.413 kb on - strand, within GFF6766at 13.413 kb on - strand, within GFF6766at 13.413 kb on - strand, within GFF6766at 13.413 kb on - strand, within GFF6766at 13.413 kb on - strand, within GFF6766at 13.415 kb on + strand, within GFF6766at 13.415 kb on + strand, within GFF6766at 13.415 kb on + strand, within GFF6766at 13.415 kb on + strand, within GFF6766at 13.415 kb on + strand, within GFF6766at 13.416 kb on - strand, within GFF6766at 13.416 kb on - strand, within GFF6766at 13.416 kb on - strand, within GFF6766at 13.445 kb on + strand, within GFF6766at 13.653 kb on - strand, within GFF6766at 13.653 kb on - strand, within GFF6766at 13.653 kb on - strand, within GFF6766at 13.653 kb on - strand, within GFF6766at 13.877 kb on + strand, within GFF6766at 13.877 kb on + strand, within GFF6766at 13.877 kb on + strand, within GFF6766at 13.877 kb on + strand, within GFF6766at 13.877 kb on + strand, within GFF6766at 13.878 kb on - strand, within GFF6766at 13.901 kb on + strand, within GFF6766at 13.901 kb on + strand, within GFF6766at 13.931 kb on + strand, within GFF6766at 13.931 kb on + strand, within GFF6766at 14.085 kb on - strandat 14.085 kb on - strandat 14.334 kb on - strand, within GFF6767at 14.663 kb on + strand, within GFF6767at 14.663 kb on + strand, within GFF6767at 14.663 kb on + strand, within GFF6767at 14.663 kb on + strand, within GFF6767at 14.663 kb on + strand, within GFF6767at 14.663 kb on + strand, within GFF6767at 14.663 kb on + strand, within GFF6767at 14.664 kb on - strand, within GFF6767at 14.664 kb on - strand, within GFF6767at 14.664 kb on - strand, within GFF6767at 14.922 kb on - strandat 14.961 kb on + strandat 14.962 kb on - strandat 14.962 kb on - strandat 14.967 kb on + strandat 14.968 kb on - strandat 14.992 kb on - strand, within GFF6768at 15.064 kb on - strand, within GFF6768at 15.066 kb on + strand, within GFF6768at 15.067 kb on - strand, within GFF6768at 15.067 kb on - strand, within GFF6768at 15.067 kb on - strand, within GFF6768at 15.085 kb on - strand, within GFF6768at 15.102 kb on + strand, within GFF6768at 15.102 kb on + strand, within GFF6768at 15.102 kb on + strand, within GFF6768at 15.102 kb on + strand, within GFF6768at 15.105 kb on + strand, within GFF6768at 15.106 kb on - strand, within GFF6768at 15.106 kb on - strand, within GFF6768at 15.126 kb on + strand, within GFF6768at 15.126 kb on + strand, within GFF6768at 15.127 kb on - strand, within GFF6768at 15.127 kb on - strand, within GFF6768at 15.127 kb on - strand, within GFF6768at 15.129 kb on + strand, within GFF6768at 15.129 kb on + strand, within GFF6768at 15.130 kb on - strand, within GFF6768at 15.130 kb on - strand, within GFF6768at 15.130 kb on - strand, within GFF6768at 15.130 kb on - strand, within GFF6768at 15.162 kb on + strand, within GFF6768at 15.162 kb on + strand, within GFF6768at 15.162 kb on + strand, within GFF6768at 15.162 kb on + strand, within GFF6768at 15.162 kb on + strand, within GFF6768at 15.162 kb on + strand, within GFF6768at 15.163 kb on - strand, within GFF6768at 15.163 kb on - strand, within GFF6768at 15.163 kb on - strand, within GFF6768at 15.163 kb on - strand, within GFF6768at 15.163 kb on - strand, within GFF6768at 15.163 kb on - strand, within GFF6768at 15.163 kb on - strand, within GFF6768at 15.259 kb on + strandat 15.332 kb on + strandat 15.332 kb on + strandat 15.333 kb on - strandat 15.333 kb on - strandat 15.333 kb on - strandat 15.363 kb on + strandat 15.363 kb on + strandat 15.363 kb on + strandat 15.363 kb on + strandat 15.363 kb on + strandat 15.364 kb on - strandat 15.364 kb on - strandat 15.377 kb on + strandat 15.377 kb on + strandat 15.378 kb on - strandat 15.378 kb on - strandat 15.594 kb on + strand, within GFF6769at 15.594 kb on + strand, within GFF6769at 15.595 kb on - strand, within GFF6769at 15.595 kb on - strand, within GFF6769at 15.595 kb on - strand, within GFF6769at 15.595 kb on - strand, within GFF6769at 15.597 kb on + strand, within GFF6769at 15.597 kb on + strand, within GFF6769at 15.598 kb on - strand, within GFF6769at 15.609 kb on + strand, within GFF6769at 15.609 kb on + strand, within GFF6769at 15.609 kb on + strand, within GFF6769at 15.610 kb on - strand, within GFF6769at 15.732 kb on + strand, within GFF6769at 15.732 kb on + strand, within GFF6769at 15.732 kb on + strand, within GFF6769at 15.733 kb on - strand, within GFF6769at 15.762 kb on + strand, within GFF6769at 15.762 kb on + strand, within GFF6769at 15.762 kb on + strand, within GFF6769at 15.763 kb on - strand, within GFF6769at 15.763 kb on - strand, within GFF6769

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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13,412 + GFF6766 0.45 -0.1
13,412 + GFF6766 0.45 -0.5
13,412 + GFF6766 0.45 -0.5
13,412 + GFF6766 0.45 -0.1
13,413 - GFF6766 0.45 -0.8
13,413 - GFF6766 0.45 -0.0
13,413 - GFF6766 0.45 -0.9
13,413 - GFF6766 0.45 -0.2
13,413 - GFF6766 0.45 -0.0
13,413 - GFF6766 0.45 +0.6
13,415 + GFF6766 0.46 -1.4
13,415 + GFF6766 0.46 +0.9
13,415 + GFF6766 0.46 -0.6
13,415 + GFF6766 0.46 +0.6
13,415 + GFF6766 0.46 +0.0
13,416 - GFF6766 0.46 -0.1
13,416 - GFF6766 0.46 -0.3
13,416 - GFF6766 0.46 -0.1
13,445 + GFF6766 0.48 -0.4
13,653 - GFF6766 0.62 +0.4
13,653 - GFF6766 0.62 -0.6
13,653 - GFF6766 0.62 -0.0
13,653 - GFF6766 0.62 +0.4
13,877 + GFF6766 0.78 -0.1
13,877 + GFF6766 0.78 +0.6
13,877 + GFF6766 0.78 -0.2
13,877 + GFF6766 0.78 +1.4
13,877 + GFF6766 0.78 -0.1
13,878 - GFF6766 0.78 -0.8
13,901 + GFF6766 0.80 -0.1
13,901 + GFF6766 0.80 -0.8
13,931 + GFF6766 0.82 +0.1
13,931 + GFF6766 0.82 -0.6
14,085 - +1.2
14,085 - -0.2
14,334 - GFF6767 0.14 +0.4
14,663 + GFF6767 0.60 -0.3
14,663 + GFF6767 0.60 -0.6
14,663 + GFF6767 0.60 +0.4
14,663 + GFF6767 0.60 -2.2
14,663 + GFF6767 0.60 -1.4
14,663 + GFF6767 0.60 +0.5
14,663 + GFF6767 0.60 -1.9
14,664 - GFF6767 0.60 -0.4
14,664 - GFF6767 0.60 -0.9
14,664 - GFF6767 0.60 -0.4
14,922 - +0.1
14,961 + +0.2
14,962 - -0.9
14,962 - +0.9
14,967 + -1.0
14,968 - -1.3
14,992 - GFF6768 0.11 +0.1
15,064 - GFF6768 0.34 -0.3
15,066 + GFF6768 0.35 +0.3
15,067 - GFF6768 0.35 -0.4
15,067 - GFF6768 0.35 +0.4
15,067 - GFF6768 0.35 -0.5
15,085 - GFF6768 0.41 -0.9
15,102 + GFF6768 0.46 +0.1
15,102 + GFF6768 0.46 -0.3
15,102 + GFF6768 0.46 -0.1
15,102 + GFF6768 0.46 -0.4
15,105 + GFF6768 0.47 +0.2
15,106 - GFF6768 0.47 -0.2
15,106 - GFF6768 0.47 +0.3
15,126 + GFF6768 0.54 -0.7
15,126 + GFF6768 0.54 +0.2
15,127 - GFF6768 0.54 +0.9
15,127 - GFF6768 0.54 -0.3
15,127 - GFF6768 0.54 +0.3
15,129 + GFF6768 0.55 +0.2
15,129 + GFF6768 0.55 -1.1
15,130 - GFF6768 0.55 -0.2
15,130 - GFF6768 0.55 -1.1
15,130 - GFF6768 0.55 -1.0
15,130 - GFF6768 0.55 +0.7
15,162 + GFF6768 0.65 +0.8
15,162 + GFF6768 0.65 -0.7
15,162 + GFF6768 0.65 +0.7
15,162 + GFF6768 0.65 +0.7
15,162 + GFF6768 0.65 +0.2
15,162 + GFF6768 0.65 +0.1
15,163 - GFF6768 0.65 +0.3
15,163 - GFF6768 0.65 -1.6
15,163 - GFF6768 0.65 -0.7
15,163 - GFF6768 0.65 +2.1
15,163 - GFF6768 0.65 +0.8
15,163 - GFF6768 0.65 -0.2
15,163 - GFF6768 0.65 +0.2
15,259 + -0.8
15,332 + -1.0
15,332 + -0.7
15,333 - -0.3
15,333 - -0.5
15,333 - -0.3
15,363 + -0.1
15,363 + -0.0
15,363 + -0.6
15,363 + -1.1
15,363 + -1.6
15,364 - -0.0
15,364 - +0.4
15,377 + -0.5
15,377 + -0.3
15,378 - -0.3
15,378 - +0.6
15,594 + GFF6769 0.23 -0.1
15,594 + GFF6769 0.23 -0.5
15,595 - GFF6769 0.23 -0.4
15,595 - GFF6769 0.23 +0.1
15,595 - GFF6769 0.23 +0.4
15,595 - GFF6769 0.23 +0.4
15,597 + GFF6769 0.24 +0.4
15,597 + GFF6769 0.24 +0.1
15,598 - GFF6769 0.24 -0.3
15,609 + GFF6769 0.25 -0.2
15,609 + GFF6769 0.25 -0.6
15,609 + GFF6769 0.25 -0.3
15,610 - GFF6769 0.25 -0.8
15,732 + GFF6769 0.42 +0.8
15,732 + GFF6769 0.42 +0.3
15,732 + GFF6769 0.42 +0.9
15,733 - GFF6769 0.42 -0.5
15,762 + GFF6769 0.46 -0.1
15,762 + GFF6769 0.46 -0.7
15,762 + GFF6769 0.46 -0.4
15,763 - GFF6769 0.46 +0.4
15,763 - GFF6769 0.46 -0.7

Or see this region's nucleotide sequence