Strain Fitness in Variovorax sp. SCN45 around GFF676

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF673 and GFF674 are separated by 78 nucleotidesGFF674 and GFF675 are separated by 10 nucleotidesGFF675 and GFF676 are separated by 33 nucleotidesGFF676 and GFF677 are separated by 16 nucleotides GFF673 - Lysophospholipase L1 and related esterases, at 725,867 to 727,138 GFF673 GFF674 - no description, at 727,217 to 727,438 GFF674 GFF675 - KEGG: 2'-5' RNA ligase , at 727,449 to 727,976 GFF675 GFF676 - Aminoglycoside 9-phosphotransferase (EC 2.7.1.-) => APH(9)-I, at 728,010 to 729,026 GFF676 GFF677 - FIG00931906: hypothetical protein, at 729,043 to 729,972 GFF677 Position (kb) 728 729 730Strain fitness (log2 ratio) -2 -1 0 1 2at 727.082 kb on + strandat 727.082 kb on + strandat 727.083 kb on - strandat 727.083 kb on - strandat 727.083 kb on - strandat 727.148 kb on + strandat 727.149 kb on - strandat 727.149 kb on - strandat 727.149 kb on - strandat 727.151 kb on - strandat 727.155 kb on + strandat 727.155 kb on + strandat 727.156 kb on - strandat 727.159 kb on + strandat 727.159 kb on + strandat 727.159 kb on + strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.163 kb on + strandat 727.163 kb on + strandat 727.164 kb on - strandat 727.164 kb on - strandat 727.164 kb on - strandat 727.168 kb on + strandat 727.169 kb on - strandat 727.356 kb on + strand, within GFF674at 727.487 kb on + strandat 727.590 kb on + strand, within GFF675at 727.590 kb on + strand, within GFF675at 727.590 kb on + strand, within GFF675at 727.591 kb on - strand, within GFF675at 727.591 kb on - strand, within GFF675at 727.962 kb on + strandat 727.962 kb on + strandat 727.998 kb on + strandat 727.999 kb on - strandat 727.999 kb on - strandat 728.160 kb on + strand, within GFF676at 728.160 kb on + strand, within GFF676at 728.160 kb on + strand, within GFF676at 728.160 kb on + strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.264 kb on + strand, within GFF676at 728.265 kb on - strand, within GFF676at 728.265 kb on - strand, within GFF676at 728.316 kb on + strand, within GFF676at 728.316 kb on + strand, within GFF676at 728.316 kb on + strand, within GFF676at 728.316 kb on + strand, within GFF676at 728.454 kb on + strand, within GFF676at 728.454 kb on + strand, within GFF676at 728.454 kb on + strand, within GFF676at 728.454 kb on + strand, within GFF676at 728.488 kb on - strand, within GFF676at 728.817 kb on + strand, within GFF676at 728.853 kb on + strand, within GFF676at 728.854 kb on - strand, within GFF676at 728.854 kb on - strand, within GFF676at 728.854 kb on - strand, within GFF676at 728.854 kb on - strand, within GFF676at 728.856 kb on + strand, within GFF676at 728.856 kb on + strand, within GFF676at 728.856 kb on + strand, within GFF676at 728.856 kb on + strand, within GFF676at 728.857 kb on - strand, within GFF676at 729.009 kb on + strandat 729.010 kb on - strandat 729.010 kb on - strandat 729.010 kb on - strandat 729.112 kb on + strandat 729.113 kb on - strandat 729.260 kb on + strand, within GFF677at 729.260 kb on + strand, within GFF677at 729.260 kb on + strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.287 kb on + strand, within GFF677at 729.287 kb on + strand, within GFF677at 729.340 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.372 kb on - strand, within GFF677at 729.387 kb on + strand, within GFF677at 729.388 kb on - strand, within GFF677at 729.388 kb on - strand, within GFF677at 729.713 kb on + strand, within GFF677at 729.713 kb on + strand, within GFF677at 729.713 kb on + strand, within GFF677at 729.714 kb on - strand, within GFF677at 729.714 kb on - strand, within GFF677at 729.714 kb on - strand, within GFF677at 729.714 kb on - strand, within GFF677at 729.986 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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727,082 + -1.1
727,082 + -0.9
727,083 - +0.3
727,083 - -0.5
727,083 - -1.7
727,148 + -2.0
727,149 - -0.5
727,149 - -0.0
727,149 - -0.5
727,151 - -0.3
727,155 + +0.7
727,155 + +0.8
727,156 - +0.1
727,159 + -0.2
727,159 + -0.5
727,159 + -0.1
727,160 - -0.3
727,160 - -0.3
727,160 - +0.9
727,160 - -0.6
727,160 - -0.3
727,160 - -1.0
727,163 + +0.3
727,163 + +0.6
727,164 - +0.1
727,164 - +0.1
727,164 - +0.1
727,168 + -0.0
727,169 - -0.1
727,356 + GFF674 0.63 +0.3
727,487 + -0.5
727,590 + GFF675 0.27 -0.0
727,590 + GFF675 0.27 +1.5
727,590 + GFF675 0.27 -0.3
727,591 - GFF675 0.27 -0.3
727,591 - GFF675 0.27 -0.5
727,962 + -0.4
727,962 + +0.1
727,998 + +0.0
727,999 - -1.9
727,999 - -0.5
728,160 + GFF676 0.15 +0.3
728,160 + GFF676 0.15 -1.4
728,160 + GFF676 0.15 +0.3
728,160 + GFF676 0.15 -0.6
728,161 - GFF676 0.15 +0.5
728,161 - GFF676 0.15 -0.3
728,161 - GFF676 0.15 -0.1
728,161 - GFF676 0.15 -0.3
728,161 - GFF676 0.15 -1.5
728,161 - GFF676 0.15 +0.6
728,260 + GFF676 0.25 -0.9
728,260 + GFF676 0.25 -0.7
728,260 + GFF676 0.25 -0.2
728,260 + GFF676 0.25 +0.2
728,260 + GFF676 0.25 +0.1
728,260 + GFF676 0.25 +0.1
728,261 - GFF676 0.25 +0.9
728,261 - GFF676 0.25 -0.1
728,261 - GFF676 0.25 -0.8
728,261 - GFF676 0.25 -0.2
728,261 - GFF676 0.25 +0.8
728,264 + GFF676 0.25 -0.9
728,265 - GFF676 0.25 -0.5
728,265 - GFF676 0.25 -0.3
728,316 + GFF676 0.30 -0.5
728,316 + GFF676 0.30 -0.5
728,316 + GFF676 0.30 -0.5
728,316 + GFF676 0.30 -0.9
728,454 + GFF676 0.44 +0.7
728,454 + GFF676 0.44 -0.4
728,454 + GFF676 0.44 +0.3
728,454 + GFF676 0.44 -0.6
728,488 - GFF676 0.47 +1.3
728,817 + GFF676 0.79 -0.4
728,853 + GFF676 0.83 +0.2
728,854 - GFF676 0.83 -0.3
728,854 - GFF676 0.83 -0.6
728,854 - GFF676 0.83 -0.3
728,854 - GFF676 0.83 -1.5
728,856 + GFF676 0.83 -0.2
728,856 + GFF676 0.83 +0.1
728,856 + GFF676 0.83 -0.9
728,856 + GFF676 0.83 +0.1
728,857 - GFF676 0.83 -0.2
729,009 + +0.3
729,010 - +0.5
729,010 - -0.9
729,010 - -0.3
729,112 + -0.3
729,113 - +2.3
729,260 + GFF677 0.23 -0.3
729,260 + GFF677 0.23 -1.9
729,260 + GFF677 0.23 -0.3
729,261 - GFF677 0.23 -0.7
729,261 - GFF677 0.23 -0.3
729,261 - GFF677 0.23 -1.1
729,261 - GFF677 0.23 -0.4
729,261 - GFF677 0.23 -0.6
729,287 + GFF677 0.26 -0.3
729,287 + GFF677 0.26 +0.9
729,340 + GFF677 0.32 -0.8
729,371 + GFF677 0.35 -0.9
729,371 + GFF677 0.35 +0.3
729,371 + GFF677 0.35 -0.7
729,371 + GFF677 0.35 -0.1
729,371 + GFF677 0.35 +0.3
729,371 + GFF677 0.35 -1.1
729,372 - GFF677 0.35 +0.9
729,387 + GFF677 0.37 -0.4
729,388 - GFF677 0.37 -0.7
729,388 - GFF677 0.37 -0.4
729,713 + GFF677 0.72 -0.5
729,713 + GFF677 0.72 -0.0
729,713 + GFF677 0.72 +1.0
729,714 - GFF677 0.72 -1.0
729,714 - GFF677 0.72 +0.4
729,714 - GFF677 0.72 -0.9
729,714 - GFF677 0.72 +0.4
729,986 + +0.1

Or see this region's nucleotide sequence