Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6750 and GFF6751 are separated by 29 nucleotides GFF6751 and GFF6752 overlap by 4 nucleotides
GFF6750 - hypothetical protein, at 63,530 to 64,090
GFF6750
GFF6751 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 64,120 to 64,887
GFF6751
GFF6752 - 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (EC 1.2.1.91) / 2-oxepin-2(3H)-ylideneacetyl-CoA hydrolase (EC 3.3.2.12), at 64,884 to 66,944
GFF6752
Position (kb) 64
65
66
67 Strain fitness (log2 ratio) -2
-1
0
1 at 63.990 kb on + strand, within GFF6750 at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.036 kb on - strand at 64.036 kb on - strand at 64.036 kb on - strand at 64.036 kb on - strand at 64.036 kb on - strand at 64.036 kb on - strand at 64.103 kb on + strand at 64.104 kb on - strand at 64.121 kb on + strand at 64.121 kb on + strand at 64.121 kb on + strand at 64.173 kb on - strand at 64.173 kb on - strand at 64.173 kb on - strand at 64.173 kb on - strand at 64.415 kb on + strand, within GFF6751 at 64.415 kb on + strand, within GFF6751 at 64.416 kb on - strand, within GFF6751 at 64.933 kb on + strand at 64.934 kb on - strand at 64.934 kb on - strand at 64.934 kb on - strand at 64.934 kb on - strand at 64.934 kb on - strand at 65.110 kb on + strand, within GFF6752 at 65.110 kb on + strand, within GFF6752 at 65.176 kb on + strand, within GFF6752 at 65.176 kb on + strand, within GFF6752 at 65.239 kb on + strand, within GFF6752 at 65.239 kb on + strand, within GFF6752 at 65.239 kb on + strand, within GFF6752 at 65.240 kb on - strand, within GFF6752 at 65.240 kb on - strand, within GFF6752 at 65.240 kb on - strand, within GFF6752 at 65.246 kb on - strand, within GFF6752 at 65.258 kb on + strand, within GFF6752 at 65.258 kb on + strand, within GFF6752 at 65.452 kb on + strand, within GFF6752 at 65.453 kb on - strand, within GFF6752 at 65.864 kb on - strand, within GFF6752 at 66.118 kb on - strand, within GFF6752 at 66.382 kb on + strand, within GFF6752 at 66.697 kb on + strand, within GFF6752 at 66.724 kb on + strand, within GFF6752 at 66.724 kb on + strand, within GFF6752 at 66.724 kb on + strand, within GFF6752 at 66.725 kb on - strand, within GFF6752 at 66.725 kb on - strand, within GFF6752 at 66.725 kb on - strand, within GFF6752 at 66.725 kb on - strand, within GFF6752 at 66.806 kb on - strand at 66.922 kb on + strand at 66.923 kb on - strand at 66.923 kb on - strand at 66.923 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 63,990 + GFF6750 0.82 +0.3 64,035 + -0.6 64,035 + -0.4 64,035 + -0.8 64,035 + -0.4 64,035 + +1.5 64,035 + -0.4 64,035 + -0.2 64,035 + -0.6 64,035 + +0.2 64,035 + -0.2 64,035 + -0.7 64,035 + -0.4 64,036 - +0.1 64,036 - +0.5 64,036 - -0.8 64,036 - -0.9 64,036 - -0.3 64,036 - +0.0 64,103 + -1.9 64,104 - +0.2 64,121 + -0.5 64,121 + -0.8 64,121 + -0.5 64,173 - +0.6 64,173 - -0.8 64,173 - +0.1 64,173 - +0.0 64,415 + GFF6751 0.38 -0.1 64,415 + GFF6751 0.38 -0.4 64,416 - GFF6751 0.39 -0.3 64,933 + +0.0 64,934 - -0.1 64,934 - -1.5 64,934 - -0.1 64,934 - -0.2 64,934 - -1.6 65,110 + GFF6752 0.11 -0.4 65,110 + GFF6752 0.11 +0.8 65,176 + GFF6752 0.14 +0.7 65,176 + GFF6752 0.14 -1.6 65,239 + GFF6752 0.17 +0.6 65,239 + GFF6752 0.17 +0.5 65,239 + GFF6752 0.17 +0.2 65,240 - GFF6752 0.17 -0.4 65,240 - GFF6752 0.17 +1.0 65,240 - GFF6752 0.17 -0.0 65,246 - GFF6752 0.18 -0.1 65,258 + GFF6752 0.18 -1.0 65,258 + GFF6752 0.18 -0.1 65,452 + GFF6752 0.28 -0.4 65,453 - GFF6752 0.28 -1.0 65,864 - GFF6752 0.48 -0.1 66,118 - GFF6752 0.60 +0.5 66,382 + GFF6752 0.73 +1.5 66,697 + GFF6752 0.88 -0.0 66,724 + GFF6752 0.89 -0.4 66,724 + GFF6752 0.89 +0.9 66,724 + GFF6752 0.89 +0.4 66,725 - GFF6752 0.89 -0.6 66,725 - GFF6752 0.89 -0.2 66,725 - GFF6752 0.89 +0.2 66,725 - GFF6752 0.89 +0.3 66,806 - -0.7 66,922 + -0.1 66,923 - -0.7 66,923 - +1.1 66,923 - -1.3
Or see this region's nucleotide sequence