Strain Fitness in Variovorax sp. SCN45 around GFF674

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF673 and GFF674 are separated by 78 nucleotidesGFF674 and GFF675 are separated by 10 nucleotidesGFF675 and GFF676 are separated by 33 nucleotides GFF673 - Lysophospholipase L1 and related esterases, at 725,867 to 727,138 GFF673 GFF674 - no description, at 727,217 to 727,438 GFF674 GFF675 - KEGG: 2'-5' RNA ligase , at 727,449 to 727,976 GFF675 GFF676 - Aminoglycoside 9-phosphotransferase (EC 2.7.1.-) => APH(9)-I, at 728,010 to 729,026 GFF676 Position (kb) 727 728Strain fitness (log2 ratio) -2 -1 0 1at 726.320 kb on + strand, within GFF673at 726.321 kb on - strand, within GFF673at 726.377 kb on + strand, within GFF673at 726.377 kb on + strand, within GFF673at 726.377 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.450 kb on - strand, within GFF673at 726.487 kb on + strand, within GFF673at 726.488 kb on - strand, within GFF673at 726.488 kb on - strand, within GFF673at 726.490 kb on + strand, within GFF673at 726.727 kb on + strand, within GFF673at 726.911 kb on + strand, within GFF673at 726.911 kb on + strand, within GFF673at 726.911 kb on + strand, within GFF673at 726.911 kb on + strand, within GFF673at 726.911 kb on + strand, within GFF673at 726.911 kb on + strand, within GFF673at 726.912 kb on - strand, within GFF673at 726.912 kb on - strand, within GFF673at 727.082 kb on + strandat 727.082 kb on + strandat 727.083 kb on - strandat 727.083 kb on - strandat 727.083 kb on - strandat 727.148 kb on + strandat 727.149 kb on - strandat 727.149 kb on - strandat 727.149 kb on - strandat 727.151 kb on - strandat 727.155 kb on + strandat 727.155 kb on + strandat 727.156 kb on - strandat 727.159 kb on + strandat 727.159 kb on + strandat 727.159 kb on + strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.160 kb on - strandat 727.163 kb on + strandat 727.163 kb on + strandat 727.164 kb on - strandat 727.164 kb on - strandat 727.164 kb on - strandat 727.168 kb on + strandat 727.169 kb on - strandat 727.356 kb on + strand, within GFF674at 727.487 kb on + strandat 727.590 kb on + strand, within GFF675at 727.590 kb on + strand, within GFF675at 727.590 kb on + strand, within GFF675at 727.591 kb on - strand, within GFF675at 727.591 kb on - strand, within GFF675at 727.962 kb on + strandat 727.962 kb on + strandat 727.998 kb on + strandat 727.999 kb on - strandat 727.999 kb on - strandat 728.160 kb on + strand, within GFF676at 728.160 kb on + strand, within GFF676at 728.160 kb on + strand, within GFF676at 728.160 kb on + strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.264 kb on + strand, within GFF676at 728.265 kb on - strand, within GFF676at 728.265 kb on - strand, within GFF676at 728.316 kb on + strand, within GFF676at 728.316 kb on + strand, within GFF676at 728.316 kb on + strand, within GFF676at 728.316 kb on + strand, within GFF676

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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726,320 + GFF673 0.36 +0.1
726,321 - GFF673 0.36 -0.5
726,377 + GFF673 0.40 -0.4
726,377 + GFF673 0.40 -0.4
726,377 + GFF673 0.40 -0.6
726,449 + GFF673 0.46 -0.6
726,449 + GFF673 0.46 +0.2
726,449 + GFF673 0.46 -0.6
726,449 + GFF673 0.46 +0.3
726,449 + GFF673 0.46 +0.9
726,450 - GFF673 0.46 +0.2
726,487 + GFF673 0.49 +0.5
726,488 - GFF673 0.49 +0.7
726,488 - GFF673 0.49 -0.5
726,490 + GFF673 0.49 +0.7
726,727 + GFF673 0.68 -0.5
726,911 + GFF673 0.82 -0.5
726,911 + GFF673 0.82 -0.2
726,911 + GFF673 0.82 +0.4
726,911 + GFF673 0.82 +0.0
726,911 + GFF673 0.82 +0.2
726,911 + GFF673 0.82 +0.5
726,912 - GFF673 0.82 -0.0
726,912 - GFF673 0.82 +0.3
727,082 + -1.1
727,082 + -0.9
727,083 - +0.3
727,083 - -0.5
727,083 - -1.7
727,148 + -2.0
727,149 - -0.5
727,149 - -0.0
727,149 - -0.5
727,151 - -0.3
727,155 + +0.7
727,155 + +0.8
727,156 - +0.1
727,159 + -0.2
727,159 + -0.5
727,159 + -0.1
727,160 - -0.3
727,160 - -0.3
727,160 - +0.9
727,160 - -0.6
727,160 - -0.3
727,160 - -1.0
727,163 + +0.3
727,163 + +0.6
727,164 - +0.1
727,164 - +0.1
727,164 - +0.1
727,168 + -0.0
727,169 - -0.1
727,356 + GFF674 0.63 +0.3
727,487 + -0.5
727,590 + GFF675 0.27 -0.0
727,590 + GFF675 0.27 +1.5
727,590 + GFF675 0.27 -0.3
727,591 - GFF675 0.27 -0.3
727,591 - GFF675 0.27 -0.5
727,962 + -0.4
727,962 + +0.1
727,998 + +0.0
727,999 - -1.9
727,999 - -0.5
728,160 + GFF676 0.15 +0.3
728,160 + GFF676 0.15 -1.4
728,160 + GFF676 0.15 +0.3
728,160 + GFF676 0.15 -0.6
728,161 - GFF676 0.15 +0.5
728,161 - GFF676 0.15 -0.3
728,161 - GFF676 0.15 -0.1
728,161 - GFF676 0.15 -0.3
728,161 - GFF676 0.15 -1.5
728,161 - GFF676 0.15 +0.6
728,260 + GFF676 0.25 -0.9
728,260 + GFF676 0.25 -0.7
728,260 + GFF676 0.25 -0.2
728,260 + GFF676 0.25 +0.2
728,260 + GFF676 0.25 +0.1
728,260 + GFF676 0.25 +0.1
728,261 - GFF676 0.25 +0.9
728,261 - GFF676 0.25 -0.1
728,261 - GFF676 0.25 -0.8
728,261 - GFF676 0.25 -0.2
728,261 - GFF676 0.25 +0.8
728,264 + GFF676 0.25 -0.9
728,265 - GFF676 0.25 -0.5
728,265 - GFF676 0.25 -0.3
728,316 + GFF676 0.30 -0.5
728,316 + GFF676 0.30 -0.5
728,316 + GFF676 0.30 -0.5
728,316 + GFF676 0.30 -0.9

Or see this region's nucleotide sequence