Strain Fitness in Variovorax sp. SCN45 around GFF672

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF670 and GFF671 are separated by 120 nucleotidesGFF671 and GFF672 are separated by 18 nucleotidesGFF672 and GFF673 are separated by 114 nucleotides GFF670 - putative amidase Psyr_2260, at 722,738 to 724,282 GFF670 GFF671 - hypothetical protein, at 724,403 to 724,825 GFF671 GFF672 - Transcriptional regulator, LysR family, at 724,844 to 725,752 GFF672 GFF673 - Lysophospholipase L1 and related esterases, at 725,867 to 727,138 GFF673 Position (kb) 724 725 726Strain fitness (log2 ratio) -2 -1 0 1 2at 723.878 kb on + strand, within GFF670at 723.878 kb on + strand, within GFF670at 723.878 kb on + strand, within GFF670at 723.936 kb on - strand, within GFF670at 723.936 kb on - strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.975 kb on - strand, within GFF670at 723.975 kb on - strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 724.269 kb on + strandat 724.326 kb on - strandat 724.330 kb on + strandat 724.331 kb on - strandat 724.331 kb on - strandat 724.331 kb on - strandat 724.332 kb on + strandat 724.343 kb on + strandat 724.344 kb on - strandat 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.568 kb on + strand, within GFF671at 724.568 kb on + strand, within GFF671at 724.569 kb on - strand, within GFF671at 724.569 kb on - strand, within GFF671at 724.748 kb on + strand, within GFF671at 724.749 kb on - strand, within GFF671at 724.802 kb on + strandat 724.802 kb on + strandat 724.802 kb on + strandat 724.803 kb on - strandat 724.803 kb on - strandat 724.803 kb on - strandat 724.803 kb on - strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.828 kb on - strandat 724.828 kb on - strandat 724.947 kb on + strand, within GFF672at 724.947 kb on + strand, within GFF672at 724.947 kb on + strand, within GFF672at 724.948 kb on - strand, within GFF672at 724.948 kb on - strand, within GFF672at 724.948 kb on - strand, within GFF672at 724.948 kb on - strand, within GFF672at 725.106 kb on + strand, within GFF672at 725.178 kb on + strand, within GFF672at 725.187 kb on + strand, within GFF672at 725.187 kb on + strand, within GFF672at 725.188 kb on - strand, within GFF672at 725.188 kb on - strand, within GFF672at 725.241 kb on + strand, within GFF672at 725.241 kb on + strand, within GFF672at 725.241 kb on + strand, within GFF672at 725.241 kb on + strand, within GFF672at 725.242 kb on - strand, within GFF672at 725.242 kb on - strand, within GFF672at 725.242 kb on - strand, within GFF672at 725.242 kb on - strand, within GFF672at 725.400 kb on + strand, within GFF672at 725.401 kb on - strand, within GFF672at 725.526 kb on + strand, within GFF672at 725.526 kb on + strand, within GFF672at 725.526 kb on + strand, within GFF672at 725.527 kb on - strand, within GFF672at 725.761 kb on + strandat 725.761 kb on + strandat 725.762 kb on - strandat 725.762 kb on - strandat 725.762 kb on - strandat 725.801 kb on - strandat 725.812 kb on + strandat 725.813 kb on - strandat 725.813 kb on - strandat 725.813 kb on - strandat 725.813 kb on - strandat 726.320 kb on + strand, within GFF673at 726.321 kb on - strand, within GFF673at 726.377 kb on + strand, within GFF673at 726.377 kb on + strand, within GFF673at 726.377 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.449 kb on + strand, within GFF673at 726.450 kb on - strand, within GFF673at 726.487 kb on + strand, within GFF673at 726.488 kb on - strand, within GFF673at 726.488 kb on - strand, within GFF673at 726.490 kb on + strand, within GFF673at 726.727 kb on + strand, within GFF673

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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723,878 + GFF670 0.74 +0.1
723,878 + GFF670 0.74 -0.8
723,878 + GFF670 0.74 -1.0
723,936 - GFF670 0.78 -0.1
723,936 - GFF670 0.78 +0.0
723,971 + GFF670 0.80 +0.2
723,971 + GFF670 0.80 -0.4
723,971 + GFF670 0.80 -1.5
723,971 + GFF670 0.80 -1.0
723,971 + GFF670 0.80 +0.1
723,971 + GFF670 0.80 -0.3
723,972 - GFF670 0.80 -1.2
723,972 - GFF670 0.80 -1.0
723,972 - GFF670 0.80 -1.1
723,972 - GFF670 0.80 -1.3
723,972 - GFF670 0.80 -0.3
723,972 - GFF670 0.80 -1.0
723,972 - GFF670 0.80 -0.4
723,972 - GFF670 0.80 -0.1
723,975 - GFF670 0.80 -0.3
723,975 - GFF670 0.80 -0.8
723,995 + GFF670 0.81 -0.3
723,995 + GFF670 0.81 -0.9
723,995 + GFF670 0.81 +2.3
723,995 + GFF670 0.81 -1.6
723,995 + GFF670 0.81 +0.1
723,995 + GFF670 0.81 -0.3
723,995 + GFF670 0.81 +0.5
723,995 + GFF670 0.81 -0.0
723,995 + GFF670 0.81 -0.7
723,996 - GFF670 0.81 -0.2
723,996 - GFF670 0.81 -1.3
723,996 - GFF670 0.81 +0.1
723,996 - GFF670 0.81 -1.3
723,996 - GFF670 0.81 -0.9
723,996 - GFF670 0.81 -0.7
723,996 - GFF670 0.81 -0.9
723,996 - GFF670 0.81 +0.5
724,269 + -0.2
724,326 - -0.2
724,330 + -0.2
724,331 - +0.6
724,331 - +0.3
724,331 - -0.5
724,332 + +0.2
724,343 + -0.7
724,344 - -0.1
724,547 + GFF671 0.34 -0.5
724,547 + GFF671 0.34 -0.8
724,547 + GFF671 0.34 -0.3
724,547 + GFF671 0.34 -0.1
724,547 + GFF671 0.34 +0.2
724,547 + GFF671 0.34 +0.5
724,548 - GFF671 0.34 +0.1
724,548 - GFF671 0.34 +0.2
724,548 - GFF671 0.34 +0.4
724,548 - GFF671 0.34 -0.2
724,548 - GFF671 0.34 -1.0
724,568 + GFF671 0.39 +0.2
724,568 + GFF671 0.39 -1.3
724,569 - GFF671 0.39 -0.2
724,569 - GFF671 0.39 +0.2
724,748 + GFF671 0.82 +0.1
724,749 - GFF671 0.82 -0.1
724,802 + +0.4
724,802 + -0.0
724,802 + -1.8
724,803 - +0.5
724,803 - -0.3
724,803 - -1.5
724,803 - -0.4
724,827 + -0.6
724,827 + -0.9
724,827 + -0.1
724,827 + +0.0
724,827 + -0.0
724,827 + -0.6
724,828 - +0.3
724,828 - -1.3
724,947 + GFF672 0.11 -0.3
724,947 + GFF672 0.11 +0.2
724,947 + GFF672 0.11 -0.0
724,948 - GFF672 0.11 -0.6
724,948 - GFF672 0.11 -0.7
724,948 - GFF672 0.11 +0.7
724,948 - GFF672 0.11 -1.0
725,106 + GFF672 0.29 -0.5
725,178 + GFF672 0.37 -0.7
725,187 + GFF672 0.38 -0.9
725,187 + GFF672 0.38 +0.3
725,188 - GFF672 0.38 -0.6
725,188 - GFF672 0.38 -1.1
725,241 + GFF672 0.44 -0.4
725,241 + GFF672 0.44 +0.2
725,241 + GFF672 0.44 -0.5
725,241 + GFF672 0.44 -1.0
725,242 - GFF672 0.44 -0.2
725,242 - GFF672 0.44 +0.3
725,242 - GFF672 0.44 +0.2
725,242 - GFF672 0.44 -0.4
725,400 + GFF672 0.61 -1.0
725,401 - GFF672 0.61 +0.3
725,526 + GFF672 0.75 -0.9
725,526 + GFF672 0.75 -0.8
725,526 + GFF672 0.75 -0.3
725,527 - GFF672 0.75 +1.5
725,761 + +0.4
725,761 + +0.7
725,762 - +0.7
725,762 - -0.1
725,762 - -0.0
725,801 - -0.2
725,812 + +0.1
725,813 - -0.6
725,813 - -0.2
725,813 - -0.3
725,813 - +0.8
726,320 + GFF673 0.36 +0.1
726,321 - GFF673 0.36 -0.5
726,377 + GFF673 0.40 -0.4
726,377 + GFF673 0.40 -0.4
726,377 + GFF673 0.40 -0.6
726,449 + GFF673 0.46 -0.6
726,449 + GFF673 0.46 +0.2
726,449 + GFF673 0.46 -0.6
726,449 + GFF673 0.46 +0.3
726,449 + GFF673 0.46 +0.9
726,450 - GFF673 0.46 +0.2
726,487 + GFF673 0.49 +0.5
726,488 - GFF673 0.49 +0.7
726,488 - GFF673 0.49 -0.5
726,490 + GFF673 0.49 +0.7
726,727 + GFF673 0.68 -0.5

Or see this region's nucleotide sequence