Strain Fitness in Variovorax sp. SCN45 around GFF6631

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
812	+		GFF6630	0.31	-0.1
813	-		GFF6630	0.31	-1.6
813	-		GFF6630	0.31	-0.6
915	+		GFF6630	0.40	-1.0
915	+		GFF6630	0.40	+0.3
916	-		GFF6630	0.40	-0.3
968	+		GFF6630	0.45	-1.3
968	+		GFF6630	0.45	-0.2
969	-		GFF6630	0.45	-0.5
969	-		GFF6630	0.45	-0.7
969	-		GFF6630	0.45	-0.6
969	-		GFF6630	0.45	+0.1
969	-		GFF6630	0.45	-0.3
1,169	+		GFF6630	0.62	+0.7
1,169	+		GFF6630	0.62	-0.4
1,169	+		GFF6630	0.62	-1.2
1,169	+		GFF6630	0.62	+0.4
1,169	+		GFF6630	0.62	-0.5
1,169	+		GFF6630	0.62	-0.5
1,169	+		GFF6630	0.62	-0.7
1,170	-		GFF6630	0.62	+0.9
1,170	-		GFF6630	0.62	-0.5
1,170	-		GFF6630	0.62	-1.3
1,170	-		GFF6630	0.62	+0.1
1,170	-		GFF6630	0.62	-0.3
1,170	-		GFF6630	0.62	+0.1
1,170	-		GFF6630	0.62	-0.1
1,170	-		GFF6630	0.62	-0.3
1,170	-		GFF6630	0.62	-0.5
1,170	-		GFF6630	0.62	+0.5
1,186	+		GFF6630	0.64	+0.0
1,186	+		GFF6630	0.64	-1.0
1,186	+		GFF6630	0.64	-0.2
1,186	+		GFF6630	0.64	-0.8
1,186	+		GFF6630	0.64	-0.1
1,186	+		GFF6630	0.64	-0.6
1,187	-		GFF6630	0.64	-0.6
1,187	-		GFF6630	0.64	+0.5
1,187	-		GFF6630	0.64	-0.2
1,210	+		GFF6630	0.66	-0.3
1,210	+		GFF6630	0.66	+0.1
1,210	+		GFF6630	0.66	+2.1
1,210	+		GFF6630	0.66	-0.4
1,210	+		GFF6630	0.66	-0.4
1,211	-		GFF6630	0.66	+0.3
1,211	-		GFF6630	0.66	-0.4
1,230	+		GFF6630	0.67	-0.2
1,231	-		GFF6630	0.68	-0.1
1,231	-		GFF6630	0.68	-0.2
1,295	+		GFF6630	0.73	-0.1
1,295	+		GFF6630	0.73	-0.7
1,295	+		GFF6630	0.73	-0.2
1,431	+		GFF6630	0.85	+0.1
1,432	-		GFF6630	0.85	-0.9
1,432	-		GFF6630	0.85	-0.5
1,495	+				-0.2
1,495	+				-0.0
1,495	+				-0.6
1,495	+				-0.1
1,495	+				-0.2
1,495	+				-0.2
1,495	+				-0.8
1,495	+				+0.1
1,495	+				-1.0
1,495	+				+0.0
1,495	+				-0.1
1,495	+				-0.5
1,496	-				-2.0
1,496	-				-0.8
1,496	-				-0.7
1,496	-				-0.3
1,496	-				-0.3
1,496	-				+0.7
1,496	-				+0.6
1,561	+				-0.2
1,561	+				-0.1
1,562	-				-0.6
1,562	-				-0.5
1,600	+				+0.6
1,600	+				-0.6
1,600	+				-0.6
1,601	-				-0.8
1,601	-				-0.4
1,601	-				+1.0
1,601	-				-0.0
1,620	+				-0.8
1,620	+				+0.3
1,620	+				+0.8
1,620	+				-0.6
1,701	+				-0.5
1,702	-				-0.6
1,702	-				-0.3
1,702	-				-1.4
1,712	+				+0.4
1,712	+				+0.8
1,712	+				+0.3
1,712	+				-0.1
1,712	+				+0.1
1,712	+				-0.9
1,712	+				+0.3
1,712	+				-0.9
1,713	-				-1.1
1,713	-				+0.2
1,713	-				-0.2
1,713	-				+0.1
1,713	-				-0.2
1,713	-				-0.2
1,713	-				-0.1
1,769	+				-0.5
1,769	+				-0.2
1,769	+				+0.2
1,769	+				-0.9
1,769	+				-0.7
1,769	+				+0.7
1,769	+				+0.6
1,769	+				+0.3
1,769	+				-0.7
1,770	-				+0.1
1,770	-				-0.8
1,770	-				-0.2
1,770	-				-0.6
1,770	-				+0.5
1,770	-				+0.6
1,770	-				+0.8
1,776	+				-0.5
1,776	+				+0.7
1,776	+				-1.5
1,776	+				-0.9
1,776	+				-1.3
1,776	+				-0.8
1,776	+				-1.1
1,776	+				-0.6
1,777	-				-0.5
1,777	-				-1.6
1,777	-				-0.1
1,777	-				+0.1
1,777	-				-1.2
1,777	-				-2.2
1,777	-				-0.4
1,785	+				-0.0
1,785	+				-0.8
1,785	+				-0.0
1,785	+				-0.8
1,786	-				+0.6
1,786	-				-0.3
1,786	-				+0.1
1,965	+		GFF6631	0.19	+0.7
1,965	+		GFF6631	0.19	-0.4
1,965	+		GFF6631	0.19	-1.0
1,966	-		GFF6631	0.19	-1.1
1,966	-		GFF6631	0.19	+1.1
1,966	-		GFF6631	0.19	-0.3
2,012	+		GFF6631	0.23	-0.2
2,012	+		GFF6631	0.23	-0.2
2,013	-		GFF6631	0.23	-0.2
2,013	-		GFF6631	0.23	-0.2
2,132	+		GFF6631	0.33	-0.8
2,133	-		GFF6631	0.33	+0.2
2,163	+		GFF6631	0.36	-0.3
2,196	+		GFF6631	0.39	+0.8
2,196	+		GFF6631	0.39	-1.1
2,197	-		GFF6631	0.39	-0.8
2,197	-		GFF6631	0.39	-0.9
2,197	-		GFF6631	0.39	-0.9
2,243	+		GFF6631	0.43	-0.5
2,243	+		GFF6631	0.43	+0.7
2,243	+		GFF6631	0.43	-0.6
2,243	+		GFF6631	0.43	+3.0
2,243	+		GFF6631	0.43	-0.5
2,243	+		GFF6631	0.43	-0.6
2,243	+		GFF6631	0.43	+0.4
2,243	+		GFF6631	0.43	+2.1
2,243	+		GFF6631	0.43	-0.1
2,243	+		GFF6631	0.43	+0.3
2,243	+		GFF6631	0.43	-0.6
2,244	-		GFF6631	0.43	-0.9
2,244	-		GFF6631	0.43	+0.7
2,244	-		GFF6631	0.43	-0.2
2,244	-		GFF6631	0.43	-0.1
2,379	+		GFF6631	0.54	-0.6
2,380	-		GFF6631	0.54	-0.2
2,380	-		GFF6631	0.54	-1.0
2,380	-		GFF6631	0.54	-1.3
2,407	+		GFF6631	0.56	-0.3
2,407	+		GFF6631	0.56	+0.2
2,407	+		GFF6631	0.56	-1.3
2,407	+		GFF6631	0.56	+0.0
2,407	+		GFF6631	0.56	-0.2
2,407	+		GFF6631	0.56	-1.5
2,407	+		GFF6631	0.56	-0.1
2,407	+		GFF6631	0.56	-0.3
2,407	+		GFF6631	0.56	-0.8
2,407	+		GFF6631	0.56	+0.4
2,407	+		GFF6631	0.56	-0.5
2,407	+		GFF6631	0.56	-0.6
2,407	+		GFF6631	0.56	+0.6
2,407	+		GFF6631	0.56	-0.9
2,408	-		GFF6631	0.56	-0.9
2,408	-		GFF6631	0.56	-0.4
2,408	-		GFF6631	0.56	-1.5
2,408	-		GFF6631	0.56	+0.0
2,408	-		GFF6631	0.56	-0.3
2,408	-		GFF6631	0.56	-1.1
2,408	-		GFF6631	0.56	+0.2
2,408	-		GFF6631	0.56	-0.2
2,408	-		GFF6631	0.56	-1.6
2,408	-		GFF6631	0.56	-0.9
2,420	+		GFF6631	0.57	-0.4
2,420	+		GFF6631	0.57	+0.4
2,420	+		GFF6631	0.57	-0.9
2,420	+		GFF6631	0.57	-0.8
2,421	-		GFF6631	0.57	+0.4
2,421	-		GFF6631	0.57	+0.0
2,421	-		GFF6631	0.57	-0.8
2,421	-		GFF6631	0.57	+0.1
2,421	-		GFF6631	0.57	-0.9
2,421	-		GFF6631	0.57	-0.3
2,421	-		GFF6631	0.57	-0.8
2,421	-		GFF6631	0.57	-1.4
2,421	-		GFF6631	0.57	-0.4
2,421	-		GFF6631	0.57	-0.3
2,441	-		GFF6631	0.59	-1.1
2,449	+		GFF6631	0.60	+1.6
2,660	+		GFF6631	0.78	+0.1
2,661	-		GFF6631	0.78	+0.2
2,661	-		GFF6631	0.78	-0.6
2,661	-		GFF6631	0.78	-0.4
2,661	-		GFF6631	0.78	+1.0
2,923	+				+0.6
2,923	+				-0.6
2,923	+				-0.6
2,923	+				-0.1
2,924	-				+0.8
2,924	-				+0.8
2,924	-				+0.4
2,924	-				-1.7
2,924	-				-1.8
2,924	-				-2.6
2,924	-				-0.5
2,924	-				-0.2
2,924	-				+0.3
2,963	+				+0.2
2,963	+				+1.9
2,963	+				-0.7
2,964	-				+0.2
2,964	-				+0.2
2,964	-				-1.2
2,964	-				-0.3
2,966	+				+1.7
2,966	+				-0.9
2,966	+				+0.1
2,966	+				+0.9
2,966	+				-0.6
2,966	+				+0.2
2,966	+				-0.4
2,966	+				-0.3
2,966	+				-0.7
2,966	+				-0.4
2,966	+				-0.4
2,967	-				+0.4
2,967	-				-0.3
2,967	-				-1.0
2,967	-				+0.2
2,967	-				-0.9
2,967	-				-0.6
2,967	-				-0.5
2,967	-				-0.1
2,967	-				-1.4
2,967	-				+0.2
2,967	-				-0.1
2,967	-				+0.2
2,967	-				-0.2
2,967	-				-1.4
2,967	-				+0.4
2,967	-				+0.6
2,967	-				-0.4
2,967	-				-1.5
2,967	-				-0.2
2,967	-				-0.4
3,046	+				-0.4
3,046	+				+0.1
3,046	+				-0.4
3,046	+				+0.2
3,046	+				-0.2
3,046	+				-0.9
3,046	+				+0.4
3,047	-				-0.6
3,047	-				+1.4
3,047	-				-0.0
3,061	+				-0.5
3,062	-				+0.2
3,127	+				-0.3
3,127	+				-1.1
3,127	+				-1.2
3,127	+				-0.2
3,127	+				+0.2
3,128	-				+0.4
3,128	-				-0.0
3,128	-				-0.4
3,128	-				-1.3
3,128	-				-0.2
3,128	-				-0.9
3,128	-				-0.1
3,128	-				+0.3
3,128	-				+0.4
3,128	-				-0.6
3,186	+				-0.7
3,187	-				-0.4
3,187	-				-1.2
3,187	-				+0.1
3,367	-				+2.0
3,379	+				+0.1
3,396	-				-2.3
3,437	+				+1.0
3,437	+				-1.0
3,440	+				-0.5
3,441	-				-0.6
3,441	-				-0.6
3,441	-				-0.1
3,473	+				-0.6
3,473	+				-0.6
3,473	+				-0.1
3,473	+				+0.6
3,473	+				-0.5
3,474	-				-0.5
3,474	-				-0.6
3,474	-				-0.2
3,474	-				-0.5
3,474	-				+0.2
3,476	+				-0.5
3,476	+				-1.0
3,477	-				-0.3
3,477	-				-1.3
3,477	-				-0.1
3,514	+		GFF6632	0.11	-0.4
3,514	+		GFF6632	0.11	-0.8
3,514	+		GFF6632	0.11	-0.8
3,515	-		GFF6632	0.11	+0.6
3,515	-		GFF6632	0.11	+0.6
3,515	-		GFF6632	0.11	-0.8
3,515	-		GFF6632	0.11	+0.1
3,515	-		GFF6632	0.11	+0.5
3,531	-		GFF6632	0.13	-1.6
3,555	+		GFF6632	0.15	+1.7
3,556	-		GFF6632	0.15	+0.3
3,556	-		GFF6632	0.15	-0.6
3,567	+		GFF6632	0.17	-0.5
3,567	+		GFF6632	0.17	-0.5
3,568	-		GFF6632	0.17	-0.7
3,568	-		GFF6632	0.17	-0.1
3,625	+		GFF6632	0.23	-0.5
3,665	-		GFF6632	0.28	-0.8
3,665	-		GFF6632	0.28	+0.2
3,665	-		GFF6632	0.28	-0.3
3,670	-		GFF6632	0.29	+1.0
3,670	-		GFF6632	0.29	+0.7
3,670	-		GFF6632	0.29	-0.0
3,670	-		GFF6632	0.29	-0.3
3,670	-		GFF6632	0.29	-0.0
3,670	-		GFF6632	0.29	-0.4
3,673	-		GFF6632	0.29	-0.4
3,746	+		GFF6632	0.37	+0.1
3,746	+		GFF6632	0.37	+0.8
3,746	+		GFF6632	0.37	-0.9
3,746	+		GFF6632	0.37	-0.1
3,746	+		GFF6632	0.37	-0.6
3,746	+		GFF6632	0.37	-0.9
3,746	+		GFF6632	0.37	+0.2
3,746	+		GFF6632	0.37	+1.1
3,746	+		GFF6632	0.37	-0.6
3,746	+		GFF6632	0.37	+0.7
3,747	-		GFF6632	0.37	+0.2
3,747	-		GFF6632	0.37	-0.2
3,747	-		GFF6632	0.37	-1.0
3,747	-		GFF6632	0.37	+0.3
3,747	-		GFF6632	0.37	+0.3
3,788	+		GFF6632	0.42	+0.1
3,788	+		GFF6632	0.42	+0.7
3,788	+		GFF6632	0.42	+2.7
3,789	-		GFF6632	0.42	+0.6
3,789	-		GFF6632	0.42	+0.7
3,789	-		GFF6632	0.42	-0.0
3,824	-		GFF6632	0.46	+1.4
3,824	-		GFF6632	0.46	+0.4
3,859	+		GFF6632	0.50	-1.1
3,859	+		GFF6632	0.50	-0.5
3,860	-		GFF6632	0.50	-0.3
3,860	-		GFF6632	0.50	-0.0
3,860	-		GFF6632	0.50	-0.0
3,860	-		GFF6632	0.50	-0.3
3,869	+		GFF6632	0.51	+0.4
3,869	+		GFF6632	0.51	-2.1
3,869	+		GFF6632	0.51	-0.9
3,869	+		GFF6632	0.51	-0.4
3,870	-		GFF6632	0.51	+0.1
3,870	-		GFF6632	0.51	+0.7
3,870	-		GFF6632	0.51	-0.2
3,870	-		GFF6632	0.51	+0.1
3,870	-		GFF6632	0.51	+0.1
3,890	+		GFF6632	0.54	+0.3
3,891	-		GFF6632	0.54	-0.6
3,891	-		GFF6632	0.54	+0.4
3,891	-		GFF6632	0.54	+0.3
3,891	-		GFF6632	0.54	-0.5
3,894	+		GFF6632	0.54	-0.4
3,894	+		GFF6632	0.54	-0.2
3,895	-		GFF6632	0.54	-0.3
3,895	-		GFF6632	0.54	+1.0
3,901	-		GFF6632	0.55	-0.3
3,912	+		GFF6632	0.56	-0.2
3,912	+		GFF6632	0.56	-0.7
3,912	+		GFF6632	0.56	-2.4
3,913	-		GFF6632	0.56	-0.4