Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6616 and GFF6617 are separated by 581 nucleotides GFF6617 and GFF6618 are separated by 79 nucleotides GFF6618 and GFF6619 are separated by 508 nucleotides
GFF6616 - UPF0380 proteins YafZ and homologs, at 60,476 to 61,300
GFF6616
GFF6617 - no description, at 61,882 to 62,058
GFF6617
GFF6618 - Mlr6156 protein, at 62,138 to 62,494
GFF6618
GFF6619 - hypothetical protein, at 63,003 to 64,163
GFF6619
Position (kb) 61
62
63 Strain fitness (log2 ratio) -2
-1
0
1
2 at 60.937 kb on + strand, within GFF6616 at 60.937 kb on + strand, within GFF6616 at 60.938 kb on - strand, within GFF6616 at 60.967 kb on - strand, within GFF6616 at 61.053 kb on - strand, within GFF6616 at 61.164 kb on + strand, within GFF6616 at 61.164 kb on + strand, within GFF6616 at 61.164 kb on + strand, within GFF6616 at 61.164 kb on + strand, within GFF6616 at 61.164 kb on + strand, within GFF6616 at 61.164 kb on + strand, within GFF6616 at 61.164 kb on + strand, within GFF6616 at 61.165 kb on - strand, within GFF6616 at 61.165 kb on - strand, within GFF6616 at 61.165 kb on - strand, within GFF6616 at 61.165 kb on - strand, within GFF6616 at 61.165 kb on - strand, within GFF6616 at 61.165 kb on - strand, within GFF6616 at 61.170 kb on + strand, within GFF6616 at 61.349 kb on - strand at 61.803 kb on - strand at 61.883 kb on + strand at 61.883 kb on + strand at 61.883 kb on + strand at 61.884 kb on - strand at 62.178 kb on + strand, within GFF6618 at 62.208 kb on + strand, within GFF6618 at 62.209 kb on - strand, within GFF6618 at 62.209 kb on - strand, within GFF6618 at 62.685 kb on + strand at 62.686 kb on - strand at 62.858 kb on - strand at 62.905 kb on + strand at 62.906 kb on - strand at 62.921 kb on + strand at 62.922 kb on - strand at 62.922 kb on - strand at 63.008 kb on + strand at 63.008 kb on + strand at 63.008 kb on + strand at 63.009 kb on - strand at 63.009 kb on - strand at 63.009 kb on - strand at 63.009 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 60,937 + GFF6616 0.56 -0.7 60,937 + GFF6616 0.56 +0.3 60,938 - GFF6616 0.56 +0.2 60,967 - GFF6616 0.60 +0.1 61,053 - GFF6616 0.70 -1.2 61,164 + GFF6616 0.83 -0.6 61,164 + GFF6616 0.83 -1.3 61,164 + GFF6616 0.83 -1.0 61,164 + GFF6616 0.83 +0.1 61,164 + GFF6616 0.83 -0.1 61,164 + GFF6616 0.83 -0.8 61,164 + GFF6616 0.83 -1.0 61,165 - GFF6616 0.84 +0.4 61,165 - GFF6616 0.84 -2.2 61,165 - GFF6616 0.84 -0.2 61,165 - GFF6616 0.84 +0.7 61,165 - GFF6616 0.84 -0.3 61,165 - GFF6616 0.84 -0.7 61,170 + GFF6616 0.84 +0.0 61,349 - -0.9 61,803 - -0.7 61,883 + -0.2 61,883 + -0.1 61,883 + +0.0 61,884 - +0.5 62,178 + GFF6618 0.11 -2.1 62,208 + GFF6618 0.20 +0.7 62,209 - GFF6618 0.20 +1.2 62,209 - GFF6618 0.20 -1.3 62,685 + -0.4 62,686 - -0.8 62,858 - -0.3 62,905 + +0.8 62,906 - -0.8 62,921 + -1.3 62,922 - -0.1 62,922 - +0.1 63,008 + -0.3 63,008 + +2.2 63,008 + +0.3 63,009 - +0.9 63,009 - +0.1 63,009 - -0.3 63,009 - -2.4
Or see this region's nucleotide sequence