Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6610 and GFF6611 are separated by 312 nucleotides GFF6611 and GFF6612 are separated by 380 nucleotides
GFF6610 - putative lipoprotein, at 53,770 to 54,120
GFF6610
GFF6611 - Transcriptional regulator, Xre family, at 54,433 to 54,726
GFF6611
GFF6612 - y4eB gene in pNGR234a homolog, at 55,107 to 55,421
GFF6612
Position (kb) 55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.192 kb on + strand at 54.192 kb on + strand at 54.192 kb on + strand at 54.192 kb on + strand at 54.192 kb on + strand at 54.193 kb on - strand at 54.193 kb on - strand at 54.193 kb on - strand at 54.193 kb on - strand at 54.311 kb on - strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.448 kb on - strand at 54.448 kb on - strand at 54.448 kb on - strand at 54.448 kb on - strand at 54.448 kb on - strand at 54.448 kb on - strand at 54.448 kb on - strand at 54.529 kb on + strand, within GFF6611 at 54.529 kb on + strand, within GFF6611 at 54.529 kb on + strand, within GFF6611 at 54.529 kb on + strand, within GFF6611 at 54.529 kb on + strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.601 kb on + strand, within GFF6611 at 54.724 kb on + strand at 54.724 kb on + strand at 54.724 kb on + strand at 54.725 kb on - strand at 54.725 kb on - strand at 54.725 kb on - strand at 54.725 kb on - strand at 55.180 kb on + strand, within GFF6612 at 55.181 kb on - strand, within GFF6612 at 55.181 kb on - strand, within GFF6612 at 55.225 kb on + strand, within GFF6612 at 55.225 kb on + strand, within GFF6612 at 55.225 kb on + strand, within GFF6612 at 55.225 kb on + strand, within GFF6612 at 55.225 kb on + strand, within GFF6612 at 55.225 kb on + strand, within GFF6612 at 55.225 kb on + strand, within GFF6612 at 55.226 kb on - strand, within GFF6612 at 55.226 kb on - strand, within GFF6612 at 55.226 kb on - strand, within GFF6612 at 55.226 kb on - strand, within GFF6612 at 55.226 kb on - strand, within GFF6612 at 55.226 kb on - strand, within GFF6612 at 55.226 kb on - strand, within GFF6612 at 55.226 kb on - strand, within GFF6612 at 55.226 kb on - strand, within GFF6612 at 55.364 kb on + strand, within GFF6612 at 55.587 kb on + strand at 55.588 kb on - strand at 55.588 kb on - strand at 56.032 kb on + strand at 56.074 kb on - strand at 56.233 kb on + strand at 56.234 kb on - strand at 56.234 kb on - strand at 56.292 kb on + strand at 56.292 kb on + strand at 56.292 kb on + strand at 56.292 kb on + strand at 56.293 kb on - strand at 56.404 kb on - strand at 56.404 kb on - strand at 56.404 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 54,192 + +0.5 54,192 + +0.4 54,192 + -0.5 54,192 + +2.5 54,192 + +0.4 54,193 - +1.1 54,193 - +0.9 54,193 - -0.7 54,193 - -2.1 54,311 - +0.4 54,447 + +0.3 54,447 + -0.6 54,447 + -0.1 54,447 + -0.7 54,447 + -0.4 54,447 + +0.5 54,447 + +0.2 54,447 + -1.7 54,447 + -0.2 54,447 + +0.1 54,448 - +0.5 54,448 - -1.3 54,448 - -1.4 54,448 - +0.4 54,448 - -0.5 54,448 - -0.5 54,448 - -0.5 54,529 + GFF6611 0.33 -0.8 54,529 + GFF6611 0.33 +0.3 54,529 + GFF6611 0.33 +0.4 54,529 + GFF6611 0.33 -1.6 54,529 + GFF6611 0.33 -0.0 54,530 - GFF6611 0.33 +0.3 54,530 - GFF6611 0.33 +0.1 54,530 - GFF6611 0.33 -0.0 54,530 - GFF6611 0.33 -0.5 54,530 - GFF6611 0.33 +0.2 54,530 - GFF6611 0.33 -1.2 54,530 - GFF6611 0.33 +0.1 54,530 - GFF6611 0.33 +0.0 54,530 - GFF6611 0.33 +0.3 54,530 - GFF6611 0.33 -0.3 54,530 - GFF6611 0.33 -0.1 54,530 - GFF6611 0.33 +0.1 54,601 + GFF6611 0.57 -0.2 54,724 + -0.3 54,724 + -0.7 54,724 + +0.2 54,725 - -1.5 54,725 - -0.3 54,725 - -0.1 54,725 - -0.3 55,180 + GFF6612 0.23 +2.5 55,181 - GFF6612 0.23 +0.4 55,181 - GFF6612 0.23 +0.8 55,225 + GFF6612 0.37 +0.0 55,225 + GFF6612 0.37 -0.8 55,225 + GFF6612 0.37 +0.5 55,225 + GFF6612 0.37 -0.2 55,225 + GFF6612 0.37 +0.9 55,225 + GFF6612 0.37 +0.4 55,225 + GFF6612 0.37 -0.2 55,226 - GFF6612 0.38 -1.0 55,226 - GFF6612 0.38 -0.4 55,226 - GFF6612 0.38 -1.5 55,226 - GFF6612 0.38 +0.3 55,226 - GFF6612 0.38 +1.1 55,226 - GFF6612 0.38 -0.6 55,226 - GFF6612 0.38 -0.2 55,226 - GFF6612 0.38 +0.5 55,226 - GFF6612 0.38 -0.6 55,364 + GFF6612 0.82 -1.3 55,587 + -0.1 55,588 - -0.6 55,588 - +0.1 56,032 + -0.5 56,074 - +0.0 56,233 + -1.1 56,234 - -0.5 56,234 - +1.5 56,292 + +0.8 56,292 + +0.1 56,292 + +0.0 56,292 + +1.2 56,293 - +0.5 56,404 - -0.5 56,404 - +0.1 56,404 - +0.5
Or see this region's nucleotide sequence