Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6599 and GFF6600 overlap by 4 nucleotides GFF6600 and GFF6601 overlap by 15 nucleotides GFF6601 and GFF6602 are separated by 448 nucleotides
GFF6599 - NAD-dependent formate dehydrogenase alpha subunit, at 45,555 to 45,800
GFF6599
GFF6600 - Sulfur carrier protein FdhD, at 45,797 to 46,732
GFF6600
GFF6601 - Type IV secretory pathway, VirD2 components (relaxase), at 46,718 to 48,703
GFF6601
GFF6602 - Type IV secretory pathway, protease TraF, at 49,152 to 49,727
GFF6602
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -2
-1
0
1 at 45.726 kb on + strand, within GFF6599 at 45.727 kb on - strand, within GFF6599 at 45.727 kb on - strand, within GFF6599 at 45.811 kb on + strand at 46.031 kb on + strand, within GFF6600 at 46.032 kb on - strand, within GFF6600 at 46.032 kb on - strand, within GFF6600 at 46.170 kb on + strand, within GFF6600 at 46.588 kb on + strand, within GFF6600 at 46.588 kb on + strand, within GFF6600 at 46.588 kb on + strand, within GFF6600 at 46.687 kb on + strand at 46.688 kb on - strand at 46.688 kb on - strand at 46.688 kb on - strand at 46.719 kb on + strand at 46.719 kb on + strand at 46.719 kb on + strand at 46.719 kb on + strand at 46.720 kb on - strand at 46.778 kb on + strand at 46.778 kb on + strand at 46.779 kb on - strand at 46.779 kb on - strand at 46.902 kb on + strand at 46.902 kb on + strand at 46.903 kb on - strand at 46.903 kb on - strand at 47.090 kb on + strand, within GFF6601 at 47.091 kb on - strand, within GFF6601 at 47.254 kb on - strand, within GFF6601 at 47.254 kb on - strand, within GFF6601 at 47.519 kb on - strand, within GFF6601 at 47.519 kb on - strand, within GFF6601 at 47.524 kb on - strand, within GFF6601 at 47.524 kb on - strand, within GFF6601 at 47.559 kb on + strand, within GFF6601 at 47.559 kb on + strand, within GFF6601 at 47.560 kb on - strand, within GFF6601 at 47.560 kb on - strand, within GFF6601 at 47.560 kb on - strand, within GFF6601 at 47.560 kb on - strand, within GFF6601 at 47.595 kb on + strand, within GFF6601 at 47.595 kb on + strand, within GFF6601 at 47.596 kb on - strand, within GFF6601 at 47.596 kb on - strand, within GFF6601 at 47.596 kb on - strand, within GFF6601 at 48.066 kb on + strand, within GFF6601 at 48.066 kb on + strand, within GFF6601 at 48.066 kb on + strand, within GFF6601 at 48.066 kb on + strand, within GFF6601 at 48.066 kb on + strand, within GFF6601 at 48.066 kb on + strand, within GFF6601 at 48.067 kb on - strand, within GFF6601 at 48.067 kb on - strand, within GFF6601 at 48.127 kb on + strand, within GFF6601 at 48.128 kb on - strand, within GFF6601 at 48.161 kb on + strand, within GFF6601 at 48.220 kb on - strand, within GFF6601 at 48.343 kb on - strand, within GFF6601 at 48.390 kb on + strand, within GFF6601 at 48.390 kb on + strand, within GFF6601 at 48.390 kb on + strand, within GFF6601 at 48.581 kb on + strand at 48.717 kb on + strand at 48.767 kb on - strand at 49.041 kb on - strand at 49.041 kb on - strand at 49.041 kb on - strand at 49.108 kb on + strand at 49.383 kb on + strand, within GFF6602 at 49.384 kb on - strand, within GFF6602 at 49.384 kb on - strand, within GFF6602 at 49.422 kb on - strand, within GFF6602 at 49.422 kb on - strand, within GFF6602 at 49.447 kb on + strand, within GFF6602 at 49.565 kb on - strand, within GFF6602 at 49.597 kb on + strand, within GFF6602 at 49.597 kb on + strand, within GFF6602 at 49.598 kb on - strand, within GFF6602 at 49.598 kb on - strand, within GFF6602 at 49.598 kb on - strand, within GFF6602
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 45,726 + GFF6599 0.70 +0.3 45,727 - GFF6599 0.70 -0.1 45,727 - GFF6599 0.70 +0.2 45,811 + -0.1 46,031 + GFF6600 0.25 -0.1 46,032 - GFF6600 0.25 -0.6 46,032 - GFF6600 0.25 -0.7 46,170 + GFF6600 0.40 -1.2 46,588 + GFF6600 0.85 +0.4 46,588 + GFF6600 0.85 -0.9 46,588 + GFF6600 0.85 -0.7 46,687 + -0.8 46,688 - -0.7 46,688 - -0.3 46,688 - -0.2 46,719 + -0.5 46,719 + -0.9 46,719 + -0.4 46,719 + -1.8 46,720 - +0.1 46,778 + +0.1 46,778 + -0.3 46,779 - -0.3 46,779 - +0.1 46,902 + -1.8 46,902 + +0.6 46,903 - -0.1 46,903 - -0.5 47,090 + GFF6601 0.19 -0.9 47,091 - GFF6601 0.19 +0.2 47,254 - GFF6601 0.27 +0.8 47,254 - GFF6601 0.27 +0.2 47,519 - GFF6601 0.40 -1.4 47,519 - GFF6601 0.40 +0.6 47,524 - GFF6601 0.41 -0.7 47,524 - GFF6601 0.41 -0.7 47,559 + GFF6601 0.42 -0.2 47,559 + GFF6601 0.42 +0.1 47,560 - GFF6601 0.42 +0.2 47,560 - GFF6601 0.42 -0.1 47,560 - GFF6601 0.42 -1.3 47,560 - GFF6601 0.42 -0.5 47,595 + GFF6601 0.44 -0.1 47,595 + GFF6601 0.44 -0.4 47,596 - GFF6601 0.44 -0.9 47,596 - GFF6601 0.44 -0.5 47,596 - GFF6601 0.44 -0.5 48,066 + GFF6601 0.68 +0.0 48,066 + GFF6601 0.68 +0.0 48,066 + GFF6601 0.68 +0.7 48,066 + GFF6601 0.68 -0.4 48,066 + GFF6601 0.68 -1.7 48,066 + GFF6601 0.68 +0.2 48,067 - GFF6601 0.68 -0.5 48,067 - GFF6601 0.68 -0.3 48,127 + GFF6601 0.71 -0.1 48,128 - GFF6601 0.71 +0.1 48,161 + GFF6601 0.73 +0.3 48,220 - GFF6601 0.76 +1.1 48,343 - GFF6601 0.82 -0.1 48,390 + GFF6601 0.84 -1.0 48,390 + GFF6601 0.84 -1.8 48,390 + GFF6601 0.84 -1.2 48,581 + -0.8 48,717 + -0.6 48,767 - +0.1 49,041 - +0.4 49,041 - +0.8 49,041 - -0.2 49,108 + -1.0 49,383 + GFF6602 0.40 -0.3 49,384 - GFF6602 0.40 -0.4 49,384 - GFF6602 0.40 +0.5 49,422 - GFF6602 0.47 +0.5 49,422 - GFF6602 0.47 -0.8 49,447 + GFF6602 0.51 -0.2 49,565 - GFF6602 0.72 -0.3 49,597 + GFF6602 0.77 -0.8 49,597 + GFF6602 0.77 +0.8 49,598 - GFF6602 0.77 -1.8 49,598 - GFF6602 0.77 +0.0 49,598 - GFF6602 0.77 -0.6
Or see this region's nucleotide sequence