Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6595 and GFF6596 overlap by 23 nucleotides GFF6596 and GFF6597 are separated by 1 nucleotides
GFF6595 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 38,580 to 40,082
GFF6595
GFF6596 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 40,060 to 41,175
GFF6596
GFF6597 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 41,177 to 42,478
GFF6597
Position (kb) 40
41
42 Strain fitness (log2 ratio) -1
0
1 at 39.427 kb on - strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.631 kb on - strand, within GFF6595 at 39.631 kb on - strand, within GFF6595 at 39.631 kb on - strand, within GFF6595 at 39.709 kb on - strand, within GFF6595 at 39.709 kb on - strand, within GFF6595 at 40.094 kb on + strand at 40.094 kb on + strand at 40.371 kb on + strand, within GFF6596 at 40.469 kb on + strand, within GFF6596 at 40.510 kb on + strand, within GFF6596 at 40.581 kb on - strand, within GFF6596 at 40.641 kb on - strand, within GFF6596 at 40.646 kb on + strand, within GFF6596 at 40.932 kb on - strand, within GFF6596 at 40.960 kb on + strand, within GFF6596 at 41.333 kb on + strand, within GFF6597 at 41.333 kb on + strand, within GFF6597 at 41.903 kb on - strand, within GFF6597 at 41.903 kb on - strand, within GFF6597 at 42.007 kb on - strand, within GFF6597
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 39,427 - GFF6595 0.56 -0.3 39,630 + GFF6595 0.70 +0.5 39,630 + GFF6595 0.70 +0.1 39,630 + GFF6595 0.70 -0.0 39,630 + GFF6595 0.70 +1.2 39,630 + GFF6595 0.70 +0.8 39,631 - GFF6595 0.70 -0.1 39,631 - GFF6595 0.70 -0.2 39,631 - GFF6595 0.70 +0.0 39,709 - GFF6595 0.75 +0.5 39,709 - GFF6595 0.75 -0.3 40,094 + +1.5 40,094 + -0.1 40,371 + GFF6596 0.28 +0.0 40,469 + GFF6596 0.37 -0.8 40,510 + GFF6596 0.40 -0.5 40,581 - GFF6596 0.47 +1.3 40,641 - GFF6596 0.52 -0.3 40,646 + GFF6596 0.53 +0.0 40,932 - GFF6596 0.78 +0.5 40,960 + GFF6596 0.81 +0.0 41,333 + GFF6597 0.12 +0.8 41,333 + GFF6597 0.12 -1.1 41,903 - GFF6597 0.56 -0.4 41,903 - GFF6597 0.56 +0.1 42,007 - GFF6597 0.64 +0.2
Or see this region's nucleotide sequence