Strain Fitness in Variovorax sp. SCN45 around GFF6448

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6447 and GFF6448 are separated by 195 nucleotidesGFF6448 and GFF6449 are separated by 13 nucleotidesGFF6449 and GFF6450 are separated by 137 nucleotides GFF6447 - no description, at 23,436 to 24,272 GFF6447 GFF6448 - Glucans biosynthesis protein D precursor, at 24,468 to 26,066 GFF6448 GFF6449 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8), at 26,080 to 26,490 GFF6449 GFF6450 - Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7), at 26,628 to 28,022 GFF6450 Position (kb) 24 25 26 27Strain fitness (log2 ratio) -2 -1 0 1 2 3at 23.553 kb on + strand, within GFF6447at 23.553 kb on + strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.622 kb on + strand, within GFF6447at 23.622 kb on + strand, within GFF6447at 23.622 kb on + strand, within GFF6447at 23.623 kb on - strand, within GFF6447at 23.623 kb on - strand, within GFF6447at 23.727 kb on + strand, within GFF6447at 23.727 kb on + strand, within GFF6447at 23.728 kb on - strand, within GFF6447at 23.728 kb on - strand, within GFF6447at 23.940 kb on + strand, within GFF6447at 23.940 kb on + strand, within GFF6447at 23.940 kb on + strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 24.156 kb on + strand, within GFF6447at 24.157 kb on - strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.234 kb on + strandat 24.234 kb on + strandat 24.234 kb on + strandat 24.235 kb on - strandat 24.235 kb on - strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.270 kb on + strandat 24.271 kb on - strandat 24.286 kb on + strandat 24.290 kb on + strandat 24.290 kb on + strandat 24.291 kb on - strandat 24.291 kb on - strandat 24.291 kb on - strandat 24.291 kb on - strandat 24.636 kb on + strand, within GFF6448at 24.636 kb on + strand, within GFF6448at 24.637 kb on - strand, within GFF6448at 24.637 kb on - strand, within GFF6448at 24.637 kb on - strand, within GFF6448at 24.637 kb on - strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.853 kb on - strand, within GFF6448at 24.853 kb on - strand, within GFF6448at 24.853 kb on - strand, within GFF6448at 24.864 kb on + strand, within GFF6448at 24.864 kb on + strand, within GFF6448at 24.864 kb on + strand, within GFF6448at 24.865 kb on - strand, within GFF6448at 24.865 kb on - strand, within GFF6448at 25.011 kb on + strand, within GFF6448at 25.011 kb on + strand, within GFF6448at 25.011 kb on + strand, within GFF6448at 25.011 kb on + strand, within GFF6448at 25.012 kb on - strand, within GFF6448at 25.012 kb on - strand, within GFF6448at 25.012 kb on - strand, within GFF6448at 25.012 kb on - strand, within GFF6448at 25.035 kb on + strand, within GFF6448at 25.036 kb on - strand, within GFF6448at 25.036 kb on - strand, within GFF6448at 25.036 kb on - strand, within GFF6448at 25.036 kb on - strand, within GFF6448at 25.041 kb on + strand, within GFF6448at 25.041 kb on + strand, within GFF6448at 25.122 kb on + strand, within GFF6448at 25.122 kb on + strand, within GFF6448at 25.122 kb on + strand, within GFF6448at 25.123 kb on - strand, within GFF6448at 25.123 kb on - strand, within GFF6448at 25.311 kb on + strand, within GFF6448at 25.311 kb on + strand, within GFF6448at 25.311 kb on + strand, within GFF6448at 25.311 kb on + strand, within GFF6448at 25.311 kb on + strand, within GFF6448at 25.312 kb on - strand, within GFF6448at 25.312 kb on - strand, within GFF6448at 25.312 kb on - strand, within GFF6448at 25.312 kb on - strand, within GFF6448at 25.312 kb on - strand, within GFF6448at 25.312 kb on - strand, within GFF6448at 25.318 kb on - strand, within GFF6448at 25.515 kb on + strand, within GFF6448at 25.516 kb on - strand, within GFF6448at 25.516 kb on - strand, within GFF6448at 25.516 kb on - strand, within GFF6448at 25.533 kb on + strand, within GFF6448at 25.684 kb on - strand, within GFF6448at 25.684 kb on - strand, within GFF6448at 25.684 kb on - strand, within GFF6448at 25.905 kb on + strand, within GFF6448at 25.905 kb on + strand, within GFF6448at 25.906 kb on - strand, within GFF6448at 25.906 kb on - strand, within GFF6448at 25.906 kb on - strand, within GFF6448at 26.046 kb on + strandat 26.046 kb on + strandat 26.046 kb on + strandat 26.046 kb on + strandat 26.052 kb on + strandat 26.053 kb on - strandat 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.286 kb on - strand, within GFF6449at 26.286 kb on - strand, within GFF6449at 26.286 kb on - strand, within GFF6449at 26.286 kb on - strand, within GFF6449at 26.330 kb on + strand, within GFF6449at 26.393 kb on + strand, within GFF6449at 26.393 kb on + strand, within GFF6449at 26.393 kb on + strand, within GFF6449at 26.394 kb on - strand, within GFF6449at 26.394 kb on - strand, within GFF6449at 26.394 kb on - strand, within GFF6449at 26.634 kb on + strandat 26.721 kb on + strandat 26.721 kb on + strandat 26.722 kb on - strandat 26.722 kb on - strandat 26.826 kb on + strand, within GFF6450

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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23,553 + GFF6447 0.14 +1.0
23,553 + GFF6447 0.14 -0.1
23,554 - GFF6447 0.14 -0.5
23,554 - GFF6447 0.14 -0.9
23,554 - GFF6447 0.14 -1.5
23,554 - GFF6447 0.14 -0.8
23,622 + GFF6447 0.22 -0.5
23,622 + GFF6447 0.22 -0.3
23,622 + GFF6447 0.22 -0.6
23,623 - GFF6447 0.22 +0.2
23,623 - GFF6447 0.22 -2.3
23,727 + GFF6447 0.35 +0.6
23,727 + GFF6447 0.35 +0.5
23,728 - GFF6447 0.35 +1.5
23,728 - GFF6447 0.35 -0.2
23,940 + GFF6447 0.60 +0.2
23,940 + GFF6447 0.60 -0.4
23,940 + GFF6447 0.60 -0.5
23,941 - GFF6447 0.60 +1.5
23,941 - GFF6447 0.60 +0.6
23,941 - GFF6447 0.60 -0.1
23,941 - GFF6447 0.60 -0.2
23,941 - GFF6447 0.60 +0.0
23,941 - GFF6447 0.60 -1.1
23,941 - GFF6447 0.60 +0.3
24,156 + GFF6447 0.86 +0.0
24,157 - GFF6447 0.86 -0.1
24,186 + GFF6447 0.90 +0.4
24,186 + GFF6447 0.90 -0.3
24,186 + GFF6447 0.90 +0.9
24,186 + GFF6447 0.90 -0.2
24,186 + GFF6447 0.90 +0.1
24,186 + GFF6447 0.90 -0.8
24,186 + GFF6447 0.90 -0.7
24,186 + GFF6447 0.90 -0.1
24,186 + GFF6447 0.90 +0.2
24,187 - GFF6447 0.90 +0.2
24,187 - GFF6447 0.90 -0.2
24,187 - GFF6447 0.90 -0.4
24,187 - GFF6447 0.90 -0.1
24,187 - GFF6447 0.90 +0.1
24,187 - GFF6447 0.90 +0.8
24,234 + +0.1
24,234 + -0.2
24,234 + +0.9
24,235 - -0.8
24,235 - -0.1
24,243 + +0.3
24,243 + -0.4
24,243 + -1.1
24,243 + +1.3
24,243 + -0.6
24,243 + +0.2
24,243 + -0.2
24,243 + -0.3
24,243 + -0.4
24,243 + +0.2
24,243 + -0.7
24,243 + +0.4
24,244 - -1.7
24,244 - -1.1
24,244 - +0.6
24,244 - +0.4
24,244 - +2.2
24,244 - -0.4
24,244 - -1.5
24,270 + +0.5
24,271 - -0.1
24,286 + -1.2
24,290 + +0.5
24,290 + -0.3
24,291 - -0.8
24,291 - -0.3
24,291 - -0.8
24,291 - -1.5
24,636 + GFF6448 0.11 +0.5
24,636 + GFF6448 0.11 -0.0
24,637 - GFF6448 0.11 -0.1
24,637 - GFF6448 0.11 +0.4
24,637 - GFF6448 0.11 -0.5
24,637 - GFF6448 0.11 -0.0
24,852 + GFF6448 0.24 -0.8
24,852 + GFF6448 0.24 -1.1
24,852 + GFF6448 0.24 -0.5
24,852 + GFF6448 0.24 -0.6
24,852 + GFF6448 0.24 +0.4
24,853 - GFF6448 0.24 -0.8
24,853 - GFF6448 0.24 +0.2
24,853 - GFF6448 0.24 -0.5
24,864 + GFF6448 0.25 +0.2
24,864 + GFF6448 0.25 +0.5
24,864 + GFF6448 0.25 -0.7
24,865 - GFF6448 0.25 +0.4
24,865 - GFF6448 0.25 -0.8
25,011 + GFF6448 0.34 -0.8
25,011 + GFF6448 0.34 +0.5
25,011 + GFF6448 0.34 -0.7
25,011 + GFF6448 0.34 -0.8
25,012 - GFF6448 0.34 +0.2
25,012 - GFF6448 0.34 +0.0
25,012 - GFF6448 0.34 +1.0
25,012 - GFF6448 0.34 -0.4
25,035 + GFF6448 0.35 +0.6
25,036 - GFF6448 0.36 +0.7
25,036 - GFF6448 0.36 +0.0
25,036 - GFF6448 0.36 -0.6
25,036 - GFF6448 0.36 -0.2
25,041 + GFF6448 0.36 -0.5
25,041 + GFF6448 0.36 +0.1
25,122 + GFF6448 0.41 -0.5
25,122 + GFF6448 0.41 -0.1
25,122 + GFF6448 0.41 +0.5
25,123 - GFF6448 0.41 -2.6
25,123 - GFF6448 0.41 +0.1
25,311 + GFF6448 0.53 -0.0
25,311 + GFF6448 0.53 +0.4
25,311 + GFF6448 0.53 -0.2
25,311 + GFF6448 0.53 +0.7
25,311 + GFF6448 0.53 -0.5
25,312 - GFF6448 0.53 +2.5
25,312 - GFF6448 0.53 +2.1
25,312 - GFF6448 0.53 +0.5
25,312 - GFF6448 0.53 -1.3
25,312 - GFF6448 0.53 -0.1
25,312 - GFF6448 0.53 -0.4
25,318 - GFF6448 0.53 -1.7
25,515 + GFF6448 0.65 -1.1
25,516 - GFF6448 0.66 +0.5
25,516 - GFF6448 0.66 -0.1
25,516 - GFF6448 0.66 +0.5
25,533 + GFF6448 0.67 +0.2
25,684 - GFF6448 0.76 +0.4
25,684 - GFF6448 0.76 +0.8
25,684 - GFF6448 0.76 +0.0
25,905 + GFF6448 0.90 +1.1
25,905 + GFF6448 0.90 -0.8
25,906 - GFF6448 0.90 -0.4
25,906 - GFF6448 0.90 -0.3
25,906 - GFF6448 0.90 -1.3
26,046 + -0.3
26,046 + +0.6
26,046 + +0.5
26,046 + -2.4
26,052 + -1.0
26,053 - +0.5
26,285 + GFF6449 0.50 -0.4
26,285 + GFF6449 0.50 -0.7
26,285 + GFF6449 0.50 +0.0
26,285 + GFF6449 0.50 +3.1
26,285 + GFF6449 0.50 +0.0
26,285 + GFF6449 0.50 -0.5
26,286 - GFF6449 0.50 -1.1
26,286 - GFF6449 0.50 +0.0
26,286 - GFF6449 0.50 -0.2
26,286 - GFF6449 0.50 +1.5
26,330 + GFF6449 0.61 -0.3
26,393 + GFF6449 0.76 +0.4
26,393 + GFF6449 0.76 +0.0
26,393 + GFF6449 0.76 -1.4
26,394 - GFF6449 0.76 -0.4
26,394 - GFF6449 0.76 +0.4
26,394 - GFF6449 0.76 -0.2
26,634 + -1.5
26,721 + -1.3
26,721 + +0.7
26,722 - -2.4
26,722 - -0.3
26,826 + GFF6450 0.14 +0.0

Or see this region's nucleotide sequence