Strain Fitness in Variovorax sp. SCN45 around GFF6430

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6428 and GFF6429 overlap by 4 nucleotidesGFF6429 and GFF6430 overlap by 4 nucleotidesGFF6430 and GFF6431 are separated by 112 nucleotidesGFF6431 and GFF6432 overlap by 4 nucleotides GFF6428 - Glyoxalase/bleomycin resistance protein/dioxygenase, at 1,988 to 2,368 GFF6428 GFF6429 - Pyruvate:Oxaloacetate transcarboxylase domain protein, at 2,365 to 3,348 GFF6429 GFF6430 - L-carnitine dehydratase/bile acid-inducible protein F, at 3,345 to 4,517 GFF6430 GFF6431 - hypothetical protein, at 4,630 to 5,406 GFF6431 GFF6432 - no description, at 5,403 to 6,131 GFF6432 Position (kb) 3 4 5Strain fitness (log2 ratio) -1 0 1at 2.372 kb on + strandat 2.372 kb on + strandat 2.793 kb on - strand, within GFF6429at 3.113 kb on + strand, within GFF6429at 3.218 kb on + strand, within GFF6429at 3.536 kb on - strand, within GFF6430at 3.536 kb on - strand, within GFF6430at 3.568 kb on + strand, within GFF6430at 3.568 kb on + strand, within GFF6430at 3.568 kb on + strand, within GFF6430at 3.569 kb on - strand, within GFF6430at 3.569 kb on - strand, within GFF6430at 3.569 kb on - strand, within GFF6430at 3.569 kb on - strand, within GFF6430at 3.569 kb on - strand, within GFF6430at 3.569 kb on - strand, within GFF6430at 3.569 kb on - strand, within GFF6430at 3.569 kb on - strand, within GFF6430at 3.569 kb on - strand, within GFF6430at 3.570 kb on + strand, within GFF6430at 3.571 kb on - strand, within GFF6430at 3.787 kb on + strand, within GFF6430at 3.787 kb on + strand, within GFF6430at 3.787 kb on + strand, within GFF6430at 3.787 kb on + strand, within GFF6430at 3.787 kb on + strand, within GFF6430at 3.787 kb on + strand, within GFF6430at 3.788 kb on - strand, within GFF6430at 3.788 kb on - strand, within GFF6430at 3.788 kb on - strand, within GFF6430at 3.788 kb on - strand, within GFF6430at 3.788 kb on - strand, within GFF6430at 3.788 kb on - strand, within GFF6430at 3.809 kb on - strand, within GFF6430at 3.919 kb on + strand, within GFF6430at 4.072 kb on + strand, within GFF6430at 4.073 kb on - strand, within GFF6430at 4.541 kb on + strandat 4.542 kb on - strandat 4.542 kb on - strandat 4.554 kb on + strandat 4.631 kb on + strandat 4.748 kb on + strand, within GFF6431at 4.749 kb on - strand, within GFF6431at 4.749 kb on - strand, within GFF6431at 4.749 kb on - strand, within GFF6431at 4.916 kb on + strand, within GFF6431at 5.159 kb on + strand, within GFF6431at 5.336 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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2,372 + -1.3
2,372 + +0.9
2,793 - GFF6429 0.43 -1.1
3,113 + GFF6429 0.76 +0.4
3,218 + GFF6429 0.87 +0.4
3,536 - GFF6430 0.16 -0.2
3,536 - GFF6430 0.16 -0.3
3,568 + GFF6430 0.19 -0.3
3,568 + GFF6430 0.19 -0.4
3,568 + GFF6430 0.19 -1.3
3,569 - GFF6430 0.19 -1.4
3,569 - GFF6430 0.19 -0.0
3,569 - GFF6430 0.19 +0.9
3,569 - GFF6430 0.19 +0.4
3,569 - GFF6430 0.19 +1.0
3,569 - GFF6430 0.19 -1.5
3,569 - GFF6430 0.19 -0.6
3,569 - GFF6430 0.19 -0.8
3,569 - GFF6430 0.19 +0.1
3,570 + GFF6430 0.19 -0.3
3,571 - GFF6430 0.19 -1.1
3,787 + GFF6430 0.38 -0.5
3,787 + GFF6430 0.38 -0.6
3,787 + GFF6430 0.38 -0.1
3,787 + GFF6430 0.38 -0.3
3,787 + GFF6430 0.38 -1.5
3,787 + GFF6430 0.38 -1.6
3,788 - GFF6430 0.38 -0.4
3,788 - GFF6430 0.38 -0.4
3,788 - GFF6430 0.38 +0.6
3,788 - GFF6430 0.38 +0.3
3,788 - GFF6430 0.38 -0.2
3,788 - GFF6430 0.38 +0.3
3,809 - GFF6430 0.40 +1.5
3,919 + GFF6430 0.49 -0.5
4,072 + GFF6430 0.62 +0.1
4,073 - GFF6430 0.62 +0.1
4,541 + -1.0
4,542 - -0.5
4,542 - +0.9
4,554 + +0.5
4,631 + +0.1
4,748 + GFF6431 0.15 -0.6
4,749 - GFF6431 0.15 +0.3
4,749 - GFF6431 0.15 +0.0
4,749 - GFF6431 0.15 -0.1
4,916 + GFF6431 0.37 -0.4
5,159 + GFF6431 0.68 -0.2
5,336 + -0.5

Or see this region's nucleotide sequence