Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF626 and GFF627 overlap by 4 nucleotides GFF627 and GFF628 are separated by 107 nucleotides GFF628 and GFF629 overlap by 4 nucleotides
GFF626 - CzcABC family efflux RND transporter, transmembrane protein, at 673,454 to 676,582
GFF626
GFF627 - Secretion protein HlyD, at 676,579 to 677,751
GFF627
GFF628 - hypothetical protein, at 677,859 to 678,527
GFF628
GFF629 - hypothetical protein, at 678,524 to 679,903
GFF629
Position (kb) 676
677
678 Strain fitness (log2 ratio) -1
0
1 at 675.625 kb on - strand, within GFF626 at 676.164 kb on + strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.170 kb on + strand, within GFF626 at 676.170 kb on + strand, within GFF626 at 676.171 kb on - strand, within GFF626 at 676.272 kb on + strand at 676.677 kb on - strand at 676.677 kb on - strand at 676.754 kb on + strand, within GFF627 at 676.761 kb on - strand, within GFF627 at 677.502 kb on - strand, within GFF627 at 677.787 kb on + strand at 677.834 kb on + strand at 677.834 kb on + strand at 677.835 kb on - strand at 677.835 kb on - strand at 677.835 kb on - strand at 677.835 kb on - strand at 678.151 kb on - strand, within GFF628 at 678.235 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 675,625 - GFF626 0.69 +0.9 676,164 + GFF626 0.87 -0.1 676,165 - GFF626 0.87 +0.7 676,165 - GFF626 0.87 +0.3 676,165 - GFF626 0.87 +0.2 676,165 - GFF626 0.87 +0.5 676,170 + GFF626 0.87 -0.1 676,170 + GFF626 0.87 +0.3 676,171 - GFF626 0.87 +0.1 676,272 + -1.5 676,677 - +0.2 676,677 - -0.0 676,754 + GFF627 0.15 +0.4 676,761 - GFF627 0.16 +0.6 677,502 - GFF627 0.79 -0.0 677,787 + -1.7 677,834 + -0.7 677,834 + -0.1 677,835 - -0.9 677,835 - -1.0 677,835 - -0.2 677,835 - -0.3 678,151 - GFF628 0.44 -0.4 678,235 + GFF628 0.56 +1.0 678,435 + GFF628 0.86 +0.4 678,435 + GFF628 0.86 -0.8 678,435 + GFF628 0.86 +0.5 678,435 + GFF628 0.86 +0.0 678,436 - GFF628 0.86 +0.3 678,436 - GFF628 0.86 -1.0 678,436 - GFF628 0.86 -0.3 678,436 - GFF628 0.86 -0.5 678,436 - GFF628 0.86 +0.9 678,504 + -0.8
Or see this region's nucleotide sequence