Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6259 and GFF6260 are separated by 1 nucleotides GFF6260 and GFF6261 overlap by 4 nucleotides GFF6261 and GFF6262 are separated by 77 nucleotides GFF6262 and GFF6263 overlap by 8 nucleotides
GFF6259 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI (EC 2.7.8.37), at 52,349 to 53,446
GFF6259
GFF6260 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH (EC 2.7.8.37), at 53,448 to 54,077
GFF6260
GFF6261 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG (EC 2.7.8.37), at 54,074 to 54,577
GFF6261
GFF6262 - Transcriptional regulator PhnF, at 54,655 to 55,410
GFF6262
GFF6263 - Uncharacterized protein Atu0170, clustered with phosphonate utilization, at 55,403 to 56,137
GFF6263
Position (kb) 54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 53.076 kb on + strand, within GFF6259 at 53.077 kb on - strand, within GFF6259 at 53.077 kb on - strand, within GFF6259 at 53.082 kb on + strand, within GFF6259 at 53.082 kb on + strand, within GFF6259 at 53.082 kb on + strand, within GFF6259 at 53.083 kb on - strand, within GFF6259 at 53.083 kb on - strand, within GFF6259 at 53.206 kb on - strand, within GFF6259 at 53.283 kb on + strand, within GFF6259 at 53.283 kb on + strand, within GFF6259 at 53.283 kb on + strand, within GFF6259 at 53.283 kb on + strand, within GFF6259 at 53.284 kb on - strand, within GFF6259 at 53.401 kb on - strand at 53.401 kb on - strand at 53.401 kb on - strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 54.303 kb on + strand, within GFF6261 at 54.303 kb on + strand, within GFF6261 at 54.304 kb on - strand, within GFF6261 at 54.304 kb on - strand, within GFF6261 at 54.586 kb on + strand at 54.587 kb on - strand at 54.587 kb on - strand at 54.587 kb on - strand at 54.603 kb on - strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.636 kb on + strand at 54.636 kb on + strand at 54.637 kb on - strand at 54.637 kb on - strand at 54.763 kb on + strand, within GFF6262 at 54.763 kb on + strand, within GFF6262 at 54.764 kb on - strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.899 kb on - strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 53,076 + GFF6259 0.66 -0.2 53,077 - GFF6259 0.66 -0.4 53,077 - GFF6259 0.66 -0.6 53,082 + GFF6259 0.67 +0.2 53,082 + GFF6259 0.67 -1.3 53,082 + GFF6259 0.67 +0.3 53,083 - GFF6259 0.67 -0.5 53,083 - GFF6259 0.67 -0.3 53,206 - GFF6259 0.78 -1.8 53,283 + GFF6259 0.85 +0.5 53,283 + GFF6259 0.85 +1.3 53,283 + GFF6259 0.85 -0.8 53,283 + GFF6259 0.85 -0.3 53,284 - GFF6259 0.85 +0.8 53,401 - -0.1 53,401 - -0.8 53,401 - -0.8 53,442 + +0.4 53,442 + -0.3 53,442 + -0.4 53,442 + -0.7 53,442 + +1.7 53,442 + +0.4 53,442 + -0.2 53,442 + -0.2 53,442 + +0.7 53,442 + -0.8 53,442 + -0.5 53,442 + -0.1 53,442 + -3.0 53,442 + -0.8 53,442 + +0.0 53,442 + -0.4 53,443 - +0.7 53,443 - -0.3 53,443 - +1.2 53,443 - +0.1 53,443 - -1.3 53,443 - +0.2 53,443 - +0.4 53,443 - +0.0 53,443 - -1.1 53,443 - +0.0 53,443 - +0.1 53,443 - -0.2 53,443 - -0.2 53,443 - -0.8 53,443 - +0.2 53,443 - -0.7 53,443 - -1.2 54,303 + GFF6261 0.45 -0.3 54,303 + GFF6261 0.45 +0.4 54,304 - GFF6261 0.46 -0.8 54,304 - GFF6261 0.46 -0.8 54,586 + -0.8 54,587 - +0.1 54,587 - +0.3 54,587 - -0.1 54,603 - -1.5 54,632 + -0.8 54,632 + +0.2 54,632 + -0.5 54,632 + -0.4 54,632 + +0.5 54,633 - -0.2 54,633 - +1.2 54,633 - -0.5 54,633 - -0.3 54,633 - -0.9 54,633 - -0.5 54,633 - -0.1 54,636 + -1.6 54,636 + +0.8 54,637 - +0.0 54,637 - +0.2 54,763 + GFF6262 0.14 +0.2 54,763 + GFF6262 0.14 +0.3 54,764 - GFF6262 0.14 +0.1 54,898 + GFF6262 0.32 -0.4 54,898 + GFF6262 0.32 +2.3 54,898 + GFF6262 0.32 -1.1 54,898 + GFF6262 0.32 -0.2 54,898 + GFF6262 0.32 +0.6 54,899 - GFF6262 0.32 -0.1 55,216 + GFF6262 0.74 -0.8 55,216 + GFF6262 0.74 -0.1 55,216 + GFF6262 0.74 -1.4 55,216 + GFF6262 0.74 +0.1 55,352 - +0.4
Or see this region's nucleotide sequence