Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF620 and GFF621 are separated by 153 nucleotides GFF621 and GFF622 overlap by 4 nucleotides GFF622 and GFF623 overlap by 4 nucleotides
GFF620 - Transcriptional regulator, LysR family, at 667,209 to 668,213
GFF620
GFF621 - Aspartate aminotransferase (EC 2.6.1.1), at 668,367 to 669,545
GFF621
GFF622 - BUG/TctC family periplasmic protein, at 669,542 to 670,528
GFF622
GFF623 - Demethylmenaquinone methyltransferase-like protein, at 670,525 to 671,253
GFF623
Position (kb) 668
669
670 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 667.399 kb on + strand, within GFF620 at 667.483 kb on + strand, within GFF620 at 667.483 kb on + strand, within GFF620 at 667.483 kb on + strand, within GFF620 at 667.484 kb on - strand, within GFF620 at 667.484 kb on - strand, within GFF620 at 667.484 kb on - strand, within GFF620 at 667.603 kb on + strand, within GFF620 at 667.603 kb on + strand, within GFF620 at 667.603 kb on + strand, within GFF620 at 667.603 kb on + strand, within GFF620 at 667.604 kb on - strand, within GFF620 at 667.604 kb on - strand, within GFF620 at 667.604 kb on - strand, within GFF620 at 667.604 kb on - strand, within GFF620 at 667.881 kb on + strand, within GFF620 at 667.881 kb on + strand, within GFF620 at 667.882 kb on - strand, within GFF620 at 667.882 kb on - strand, within GFF620 at 667.882 kb on - strand, within GFF620 at 668.226 kb on + strand at 668.227 kb on - strand at 668.227 kb on - strand at 668.227 kb on - strand at 668.227 kb on - strand at 668.306 kb on + strand at 668.307 kb on - strand at 668.580 kb on + strand, within GFF621 at 668.856 kb on + strand, within GFF621 at 668.856 kb on + strand, within GFF621 at 668.856 kb on + strand, within GFF621 at 668.856 kb on + strand, within GFF621 at 668.857 kb on - strand, within GFF621 at 668.857 kb on - strand, within GFF621 at 668.857 kb on - strand, within GFF621 at 668.857 kb on - strand, within GFF621 at 668.857 kb on - strand, within GFF621 at 668.857 kb on - strand, within GFF621 at 668.857 kb on - strand, within GFF621 at 668.864 kb on + strand, within GFF621 at 668.864 kb on + strand, within GFF621 at 668.934 kb on + strand, within GFF621 at 668.934 kb on + strand, within GFF621 at 668.934 kb on + strand, within GFF621 at 668.934 kb on + strand, within GFF621 at 668.934 kb on + strand, within GFF621 at 668.934 kb on + strand, within GFF621 at 668.935 kb on - strand, within GFF621 at 668.949 kb on + strand, within GFF621 at 668.949 kb on + strand, within GFF621 at 668.949 kb on + strand, within GFF621 at 668.950 kb on - strand, within GFF621 at 668.950 kb on - strand, within GFF621 at 669.036 kb on + strand, within GFF621 at 669.037 kb on - strand, within GFF621 at 669.288 kb on + strand, within GFF621 at 669.288 kb on + strand, within GFF621 at 669.289 kb on - strand, within GFF621 at 669.289 kb on - strand, within GFF621 at 669.417 kb on + strand, within GFF621 at 669.932 kb on + strand, within GFF622 at 669.933 kb on - strand, within GFF622 at 669.933 kb on - strand, within GFF622 at 669.933 kb on - strand, within GFF622 at 669.933 kb on - strand, within GFF622 at 669.989 kb on + strand, within GFF622 at 669.990 kb on - strand, within GFF622 at 670.106 kb on + strand, within GFF622 at 670.107 kb on - strand, within GFF622 at 670.107 kb on - strand, within GFF622 at 670.107 kb on - strand, within GFF622 at 670.107 kb on - strand, within GFF622 at 670.107 kb on - strand, within GFF622
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 667,399 + GFF620 0.19 -0.5 667,483 + GFF620 0.27 +3.3 667,483 + GFF620 0.27 -1.5 667,483 + GFF620 0.27 -0.1 667,484 - GFF620 0.27 -1.5 667,484 - GFF620 0.27 -0.5 667,484 - GFF620 0.27 -1.4 667,603 + GFF620 0.39 +0.0 667,603 + GFF620 0.39 -0.3 667,603 + GFF620 0.39 -0.1 667,603 + GFF620 0.39 -0.4 667,604 - GFF620 0.39 +1.3 667,604 - GFF620 0.39 -0.4 667,604 - GFF620 0.39 +0.9 667,604 - GFF620 0.39 -0.4 667,881 + GFF620 0.67 -1.5 667,881 + GFF620 0.67 -0.2 667,882 - GFF620 0.67 -0.9 667,882 - GFF620 0.67 +0.1 667,882 - GFF620 0.67 +0.1 668,226 + +1.3 668,227 - +0.2 668,227 - -1.7 668,227 - +0.3 668,227 - +1.5 668,306 + -0.9 668,307 - -0.1 668,580 + GFF621 0.18 +0.4 668,856 + GFF621 0.41 -1.4 668,856 + GFF621 0.41 -0.4 668,856 + GFF621 0.41 +1.3 668,856 + GFF621 0.41 -0.0 668,857 - GFF621 0.42 -0.8 668,857 - GFF621 0.42 -0.3 668,857 - GFF621 0.42 -0.5 668,857 - GFF621 0.42 -0.7 668,857 - GFF621 0.42 -1.5 668,857 - GFF621 0.42 -0.1 668,857 - GFF621 0.42 +0.1 668,864 + GFF621 0.42 -0.1 668,864 + GFF621 0.42 +0.5 668,934 + GFF621 0.48 +0.3 668,934 + GFF621 0.48 -1.0 668,934 + GFF621 0.48 +0.6 668,934 + GFF621 0.48 -0.5 668,934 + GFF621 0.48 -0.5 668,934 + GFF621 0.48 -0.2 668,935 - GFF621 0.48 -1.7 668,949 + GFF621 0.49 +0.5 668,949 + GFF621 0.49 -1.1 668,949 + GFF621 0.49 -0.7 668,950 - GFF621 0.49 -0.0 668,950 - GFF621 0.49 -0.5 669,036 + GFF621 0.57 -0.4 669,037 - GFF621 0.57 -1.2 669,288 + GFF621 0.78 -0.9 669,288 + GFF621 0.78 -1.0 669,289 - GFF621 0.78 +0.5 669,289 - GFF621 0.78 +0.3 669,417 + GFF621 0.89 -1.0 669,932 + GFF622 0.40 -0.3 669,933 - GFF622 0.40 +0.3 669,933 - GFF622 0.40 -0.8 669,933 - GFF622 0.40 -1.0 669,933 - GFF622 0.40 +0.1 669,989 + GFF622 0.45 -1.3 669,990 - GFF622 0.45 -1.8 670,106 + GFF622 0.57 -1.2 670,107 - GFF622 0.57 +0.6 670,107 - GFF622 0.57 -0.9 670,107 - GFF622 0.57 -0.4 670,107 - GFF622 0.57 -1.1 670,107 - GFF622 0.57 -0.2
Or see this region's nucleotide sequence