Strain Fitness in Variovorax sp. SCN45 around GFF6139

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6137 and GFF6138 are separated by 20 nucleotidesGFF6138 and GFF6139 are separated by 161 nucleotidesGFF6139 and GFF6140 are separated by 7 nucleotides GFF6137 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6, at 38,655 to 40,493 GFF6137 GFF6138 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 6, at 40,514 to 41,140 GFF6138 GFF6139 - Serine/threonine kinase, at 41,302 to 42,588 GFF6139 GFF6140 - Uncharacterized MFS-type transporter Saci_1521, at 42,596 to 44,038 GFF6140 Position (kb) 41 42 43Strain fitness (log2 ratio) -1 0 1 2at 40.541 kb on - strandat 40.809 kb on + strand, within GFF6138at 40.809 kb on + strand, within GFF6138at 40.868 kb on + strand, within GFF6138at 40.868 kb on + strand, within GFF6138at 40.868 kb on + strand, within GFF6138at 40.869 kb on - strand, within GFF6138at 40.869 kb on - strand, within GFF6138at 40.974 kb on + strand, within GFF6138at 40.975 kb on - strand, within GFF6138at 40.975 kb on - strand, within GFF6138at 40.975 kb on - strand, within GFF6138at 41.015 kb on + strand, within GFF6138at 41.015 kb on + strand, within GFF6138at 41.015 kb on + strand, within GFF6138at 41.016 kb on - strand, within GFF6138at 41.016 kb on - strand, within GFF6138at 41.080 kb on + strandat 41.157 kb on + strandat 41.158 kb on - strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.174 kb on - strandat 41.174 kb on - strandat 41.239 kb on + strandat 41.239 kb on + strandat 41.240 kb on - strandat 41.247 kb on + strandat 41.247 kb on + strandat 41.247 kb on + strandat 41.248 kb on - strandat 41.287 kb on + strandat 41.294 kb on - strandat 41.713 kb on + strand, within GFF6139at 41.713 kb on + strand, within GFF6139at 41.713 kb on + strand, within GFF6139at 41.714 kb on - strand, within GFF6139at 41.714 kb on - strand, within GFF6139at 41.783 kb on - strand, within GFF6139at 41.783 kb on - strand, within GFF6139at 41.783 kb on - strand, within GFF6139at 41.788 kb on + strand, within GFF6139at 42.037 kb on + strand, within GFF6139at 42.037 kb on + strand, within GFF6139at 42.037 kb on + strand, within GFF6139at 42.037 kb on + strand, within GFF6139at 42.038 kb on - strand, within GFF6139at 42.038 kb on - strand, within GFF6139at 42.038 kb on - strand, within GFF6139at 42.038 kb on - strand, within GFF6139at 42.586 kb on + strandat 42.587 kb on - strandat 42.672 kb on + strandat 42.673 kb on - strandat 42.724 kb on - strandat 42.816 kb on + strand, within GFF6140at 42.816 kb on + strand, within GFF6140at 42.817 kb on - strand, within GFF6140at 42.817 kb on - strand, within GFF6140at 42.817 kb on - strand, within GFF6140at 42.817 kb on - strand, within GFF6140at 42.817 kb on - strand, within GFF6140at 42.876 kb on + strand, within GFF6140at 43.005 kb on + strand, within GFF6140at 43.005 kb on + strand, within GFF6140at 43.005 kb on + strand, within GFF6140at 43.005 kb on + strand, within GFF6140at 43.005 kb on + strand, within GFF6140at 43.005 kb on + strand, within GFF6140at 43.006 kb on - strand, within GFF6140at 43.006 kb on - strand, within GFF6140at 43.006 kb on - strand, within GFF6140at 43.006 kb on - strand, within GFF6140at 43.006 kb on - strand, within GFF6140at 43.101 kb on + strand, within GFF6140at 43.101 kb on + strand, within GFF6140at 43.101 kb on + strand, within GFF6140at 43.101 kb on + strand, within GFF6140at 43.102 kb on - strand, within GFF6140at 43.102 kb on - strand, within GFF6140at 43.102 kb on - strand, within GFF6140at 43.131 kb on + strand, within GFF6140at 43.132 kb on - strand, within GFF6140at 43.156 kb on - strand, within GFF6140at 43.156 kb on - strand, within GFF6140at 43.176 kb on + strand, within GFF6140at 43.176 kb on + strand, within GFF6140at 43.176 kb on + strand, within GFF6140at 43.293 kb on + strand, within GFF6140at 43.294 kb on - strand, within GFF6140

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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40,541 - -0.9
40,809 + GFF6138 0.47 -0.2
40,809 + GFF6138 0.47 +0.2
40,868 + GFF6138 0.56 -0.0
40,868 + GFF6138 0.56 -0.5
40,868 + GFF6138 0.56 +0.2
40,869 - GFF6138 0.57 -0.4
40,869 - GFF6138 0.57 +0.1
40,974 + GFF6138 0.73 +0.2
40,975 - GFF6138 0.74 +0.1
40,975 - GFF6138 0.74 +0.1
40,975 - GFF6138 0.74 -0.6
41,015 + GFF6138 0.80 +0.6
41,015 + GFF6138 0.80 -1.5
41,015 + GFF6138 0.80 -1.1
41,016 - GFF6138 0.80 +0.5
41,016 - GFF6138 0.80 +0.4
41,080 + -0.7
41,157 + -0.2
41,158 - +0.6
41,173 + +0.5
41,173 + -0.3
41,173 + -1.6
41,173 + -0.1
41,173 + +1.2
41,173 + -1.1
41,174 - -0.3
41,174 - +0.2
41,239 + -0.8
41,239 + +0.0
41,240 - +0.0
41,247 + -1.1
41,247 + -0.6
41,247 + +0.2
41,248 - -0.1
41,287 + -1.0
41,294 - -0.2
41,713 + GFF6139 0.32 -1.4
41,713 + GFF6139 0.32 -0.2
41,713 + GFF6139 0.32 -1.2
41,714 - GFF6139 0.32 -0.4
41,714 - GFF6139 0.32 +0.1
41,783 - GFF6139 0.37 -0.1
41,783 - GFF6139 0.37 -0.1
41,783 - GFF6139 0.37 -1.1
41,788 + GFF6139 0.38 +0.9
42,037 + GFF6139 0.57 -1.3
42,037 + GFF6139 0.57 -0.9
42,037 + GFF6139 0.57 -0.9
42,037 + GFF6139 0.57 +0.7
42,038 - GFF6139 0.57 -0.1
42,038 - GFF6139 0.57 +0.9
42,038 - GFF6139 0.57 +0.6
42,038 - GFF6139 0.57 +0.0
42,586 + -1.1
42,587 - -1.0
42,672 + +0.8
42,673 - +0.1
42,724 - -0.7
42,816 + GFF6140 0.15 -0.0
42,816 + GFF6140 0.15 +0.5
42,817 - GFF6140 0.15 -1.0
42,817 - GFF6140 0.15 +2.1
42,817 - GFF6140 0.15 -0.3
42,817 - GFF6140 0.15 -0.1
42,817 - GFF6140 0.15 -1.4
42,876 + GFF6140 0.19 -0.3
43,005 + GFF6140 0.28 -0.4
43,005 + GFF6140 0.28 +0.2
43,005 + GFF6140 0.28 -0.4
43,005 + GFF6140 0.28 -0.1
43,005 + GFF6140 0.28 -0.7
43,005 + GFF6140 0.28 -0.3
43,006 - GFF6140 0.28 -0.0
43,006 - GFF6140 0.28 +0.8
43,006 - GFF6140 0.28 -0.4
43,006 - GFF6140 0.28 -0.3
43,006 - GFF6140 0.28 +0.3
43,101 + GFF6140 0.35 -0.3
43,101 + GFF6140 0.35 +0.5
43,101 + GFF6140 0.35 -1.3
43,101 + GFF6140 0.35 -1.1
43,102 - GFF6140 0.35 -0.0
43,102 - GFF6140 0.35 -0.4
43,102 - GFF6140 0.35 -0.1
43,131 + GFF6140 0.37 -0.9
43,132 - GFF6140 0.37 -1.1
43,156 - GFF6140 0.39 -0.1
43,156 - GFF6140 0.39 -0.6
43,176 + GFF6140 0.40 +0.2
43,176 + GFF6140 0.40 -0.0
43,176 + GFF6140 0.40 -0.1
43,293 + GFF6140 0.48 +0.1
43,294 - GFF6140 0.48 +1.5

Or see this region's nucleotide sequence