Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6134 and GFF6135 are separated by 138 nucleotides GFF6135 and GFF6136 are separated by 220 nucleotides
GFF6134 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 35,107 to 35,988
GFF6134
GFF6135 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 36,127 to 37,281
GFF6135
GFF6136 - TRAP transporter solute receptor, unknown substrate 6, at 37,502 to 38,584
GFF6136
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.213 kb on + strand, within GFF6134 at 35.213 kb on + strand, within GFF6134 at 35.213 kb on + strand, within GFF6134 at 35.214 kb on - strand, within GFF6134 at 35.357 kb on + strand, within GFF6134 at 35.417 kb on + strand, within GFF6134 at 35.418 kb on - strand, within GFF6134 at 35.450 kb on + strand, within GFF6134 at 35.450 kb on + strand, within GFF6134 at 35.451 kb on - strand, within GFF6134 at 35.911 kb on + strand at 35.912 kb on - strand at 35.942 kb on + strand at 35.942 kb on + strand at 35.943 kb on - strand at 35.943 kb on - strand at 35.943 kb on - strand at 36.054 kb on + strand at 36.054 kb on + strand at 36.054 kb on + strand at 36.054 kb on + strand at 36.055 kb on - strand at 36.055 kb on - strand at 36.055 kb on - strand at 36.055 kb on - strand at 36.055 kb on - strand at 36.055 kb on - strand at 36.055 kb on - strand at 36.120 kb on + strand at 36.128 kb on + strand at 36.128 kb on + strand at 36.128 kb on + strand at 36.128 kb on + strand at 36.129 kb on - strand at 36.129 kb on - strand at 36.129 kb on - strand at 36.129 kb on - strand at 36.129 kb on - strand at 36.191 kb on + strand at 36.350 kb on + strand, within GFF6135 at 36.350 kb on + strand, within GFF6135 at 36.350 kb on + strand, within GFF6135 at 36.351 kb on - strand, within GFF6135 at 36.351 kb on - strand, within GFF6135 at 36.351 kb on - strand, within GFF6135 at 36.351 kb on - strand, within GFF6135 at 36.351 kb on - strand, within GFF6135 at 36.351 kb on - strand, within GFF6135 at 36.351 kb on - strand, within GFF6135 at 36.351 kb on - strand, within GFF6135 at 36.362 kb on + strand, within GFF6135 at 36.362 kb on + strand, within GFF6135 at 36.410 kb on + strand, within GFF6135 at 36.410 kb on + strand, within GFF6135 at 36.410 kb on + strand, within GFF6135 at 36.411 kb on - strand, within GFF6135 at 36.411 kb on - strand, within GFF6135 at 36.411 kb on - strand, within GFF6135 at 36.473 kb on + strand, within GFF6135 at 36.473 kb on + strand, within GFF6135 at 36.473 kb on + strand, within GFF6135 at 36.473 kb on + strand, within GFF6135 at 36.473 kb on + strand, within GFF6135 at 36.474 kb on - strand, within GFF6135 at 36.474 kb on - strand, within GFF6135 at 36.474 kb on - strand, within GFF6135 at 36.474 kb on - strand, within GFF6135 at 36.744 kb on - strand, within GFF6135 at 36.872 kb on + strand, within GFF6135 at 36.872 kb on + strand, within GFF6135 at 36.872 kb on + strand, within GFF6135 at 36.873 kb on - strand, within GFF6135 at 36.873 kb on - strand, within GFF6135 at 36.873 kb on - strand, within GFF6135 at 37.306 kb on + strand at 37.306 kb on + strand at 37.306 kb on + strand at 37.306 kb on + strand at 37.306 kb on + strand at 37.306 kb on + strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.310 kb on + strand at 37.310 kb on + strand at 37.310 kb on + strand at 37.310 kb on + strand at 37.310 kb on + strand at 37.311 kb on - strand at 37.321 kb on - strand at 37.329 kb on - strand at 37.329 kb on - strand at 37.339 kb on + strand at 37.340 kb on - strand at 37.388 kb on - strand at 37.407 kb on + strand at 37.407 kb on + strand at 37.407 kb on + strand at 37.408 kb on - strand at 37.419 kb on + strand at 37.420 kb on - strand at 37.435 kb on + strand at 37.435 kb on + strand at 37.436 kb on - strand at 37.436 kb on - strand at 37.436 kb on - strand at 37.436 kb on - strand at 37.437 kb on + strand at 37.438 kb on - strand at 37.438 kb on - strand at 37.497 kb on + strand at 37.497 kb on + strand at 37.497 kb on + strand at 37.497 kb on + strand at 37.497 kb on + strand at 37.497 kb on + strand at 37.498 kb on - strand at 37.498 kb on - strand at 37.498 kb on - strand at 37.498 kb on - strand at 37.498 kb on - strand at 37.498 kb on - strand at 37.790 kb on + strand, within GFF6136 at 37.791 kb on - strand, within GFF6136 at 37.791 kb on - strand, within GFF6136 at 37.793 kb on + strand, within GFF6136 at 37.793 kb on + strand, within GFF6136 at 37.793 kb on + strand, within GFF6136 at 37.793 kb on + strand, within GFF6136 at 37.793 kb on + strand, within GFF6136 at 37.793 kb on + strand, within GFF6136 at 37.793 kb on + strand, within GFF6136 at 37.794 kb on - strand, within GFF6136 at 37.794 kb on - strand, within GFF6136 at 37.794 kb on - strand, within GFF6136 at 37.794 kb on - strand, within GFF6136 at 37.794 kb on - strand, within GFF6136 at 37.794 kb on - strand, within GFF6136 at 37.880 kb on + strand, within GFF6136 at 37.881 kb on - strand, within GFF6136 at 37.922 kb on + strand, within GFF6136 at 37.922 kb on + strand, within GFF6136 at 37.922 kb on + strand, within GFF6136 at 37.922 kb on + strand, within GFF6136 at 37.923 kb on - strand, within GFF6136 at 37.923 kb on - strand, within GFF6136 at 37.923 kb on - strand, within GFF6136 at 37.923 kb on - strand, within GFF6136 at 37.977 kb on - strand, within GFF6136 at 38.103 kb on - strand, within GFF6136 at 38.103 kb on - strand, within GFF6136 at 38.103 kb on - strand, within GFF6136 at 38.103 kb on - strand, within GFF6136 at 38.103 kb on - strand, within GFF6136 at 38.192 kb on + strand, within GFF6136 at 38.192 kb on + strand, within GFF6136 at 38.192 kb on + strand, within GFF6136 at 38.192 kb on + strand, within GFF6136 at 38.193 kb on - strand, within GFF6136 at 38.193 kb on - strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.198 kb on + strand, within GFF6136 at 38.198 kb on + strand, within GFF6136 at 38.198 kb on + strand, within GFF6136 at 38.198 kb on + strand, within GFF6136 at 38.199 kb on - strand, within GFF6136 at 38.199 kb on - strand, within GFF6136 at 38.199 kb on - strand, within GFF6136 at 38.199 kb on - strand, within GFF6136 at 38.201 kb on + strand, within GFF6136 at 38.202 kb on - strand, within GFF6136
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 35,213 + GFF6134 0.12 +0.3 35,213 + GFF6134 0.12 -0.3 35,213 + GFF6134 0.12 +0.1 35,214 - GFF6134 0.12 -0.5 35,357 + GFF6134 0.28 -1.2 35,417 + GFF6134 0.35 +1.1 35,418 - GFF6134 0.35 -1.4 35,450 + GFF6134 0.39 -0.5 35,450 + GFF6134 0.39 -0.4 35,451 - GFF6134 0.39 +0.9 35,911 + -1.3 35,912 - -1.9 35,942 + -0.6 35,942 + -0.5 35,943 - +0.4 35,943 - -0.3 35,943 - +0.3 36,054 + -0.9 36,054 + +1.0 36,054 + +0.6 36,054 + +0.1 36,055 - -0.8 36,055 - -0.5 36,055 - +0.0 36,055 - +0.5 36,055 - -0.1 36,055 - -0.8 36,055 - -0.4 36,120 + +0.2 36,128 + -0.6 36,128 + -0.4 36,128 + +0.6 36,128 + -0.3 36,129 - +0.3 36,129 - +0.7 36,129 - -0.2 36,129 - -0.1 36,129 - +0.1 36,191 + +1.7 36,350 + GFF6135 0.19 -0.7 36,350 + GFF6135 0.19 +2.5 36,350 + GFF6135 0.19 -0.5 36,351 - GFF6135 0.19 +0.3 36,351 - GFF6135 0.19 +0.1 36,351 - GFF6135 0.19 -0.1 36,351 - GFF6135 0.19 +1.5 36,351 - GFF6135 0.19 -0.2 36,351 - GFF6135 0.19 -0.6 36,351 - GFF6135 0.19 +0.7 36,351 - GFF6135 0.19 -0.4 36,362 + GFF6135 0.20 +0.1 36,362 + GFF6135 0.20 -2.9 36,410 + GFF6135 0.25 +0.0 36,410 + GFF6135 0.25 -0.2 36,410 + GFF6135 0.25 -0.1 36,411 - GFF6135 0.25 -0.4 36,411 - GFF6135 0.25 +0.1 36,411 - GFF6135 0.25 +0.4 36,473 + GFF6135 0.30 -0.3 36,473 + GFF6135 0.30 +0.0 36,473 + GFF6135 0.30 -0.0 36,473 + GFF6135 0.30 +0.8 36,473 + GFF6135 0.30 +1.3 36,474 - GFF6135 0.30 -0.3 36,474 - GFF6135 0.30 +0.2 36,474 - GFF6135 0.30 -0.3 36,474 - GFF6135 0.30 -0.4 36,744 - GFF6135 0.53 +0.7 36,872 + GFF6135 0.65 +0.1 36,872 + GFF6135 0.65 +0.0 36,872 + GFF6135 0.65 +0.2 36,873 - GFF6135 0.65 -0.3 36,873 - GFF6135 0.65 +0.7 36,873 - GFF6135 0.65 +0.2 37,306 + -1.3 37,306 + -0.3 37,306 + +0.1 37,306 + -0.1 37,306 + +1.8 37,306 + +1.5 37,307 - +0.2 37,307 - -1.1 37,307 - -1.3 37,307 - +1.2 37,307 - -0.8 37,307 - +0.6 37,307 - -0.8 37,307 - +0.1 37,307 - -0.3 37,307 - -0.6 37,307 - -0.6 37,307 - -0.4 37,307 - -0.2 37,310 + +0.0 37,310 + +0.2 37,310 + -0.6 37,310 + +0.2 37,310 + -0.6 37,311 - +0.5 37,321 - +0.6 37,329 - -0.3 37,329 - -0.1 37,339 + -1.1 37,340 - -0.4 37,388 - -0.4 37,407 + -0.4 37,407 + -0.2 37,407 + +0.1 37,408 - +0.3 37,419 + -0.3 37,420 - -0.3 37,435 + +0.3 37,435 + -0.3 37,436 - -1.2 37,436 - +0.1 37,436 - -1.1 37,436 - -0.1 37,437 + -0.5 37,438 - +0.2 37,438 - -0.5 37,497 + -0.1 37,497 + +1.1 37,497 + +0.7 37,497 + -0.0 37,497 + -0.2 37,497 + -0.4 37,498 - +1.0 37,498 - -2.1 37,498 - -0.3 37,498 - -0.9 37,498 - -1.1 37,498 - +1.5 37,790 + GFF6136 0.27 +0.1 37,791 - GFF6136 0.27 -0.0 37,791 - GFF6136 0.27 -0.6 37,793 + GFF6136 0.27 -0.2 37,793 + GFF6136 0.27 +0.2 37,793 + GFF6136 0.27 +1.5 37,793 + GFF6136 0.27 -0.4 37,793 + GFF6136 0.27 -0.1 37,793 + GFF6136 0.27 +0.0 37,793 + GFF6136 0.27 -0.6 37,794 - GFF6136 0.27 -0.1 37,794 - GFF6136 0.27 +0.5 37,794 - GFF6136 0.27 +0.2 37,794 - GFF6136 0.27 +0.3 37,794 - GFF6136 0.27 +1.1 37,794 - GFF6136 0.27 -0.1 37,880 + GFF6136 0.35 -0.9 37,881 - GFF6136 0.35 +0.3 37,922 + GFF6136 0.39 +0.1 37,922 + GFF6136 0.39 +0.2 37,922 + GFF6136 0.39 -0.7 37,922 + GFF6136 0.39 -2.0 37,923 - GFF6136 0.39 +0.4 37,923 - GFF6136 0.39 +0.2 37,923 - GFF6136 0.39 -0.3 37,923 - GFF6136 0.39 -0.9 37,977 - GFF6136 0.44 -0.0 38,103 - GFF6136 0.55 -0.3 38,103 - GFF6136 0.55 -0.5 38,103 - GFF6136 0.55 -0.0 38,103 - GFF6136 0.55 -0.6 38,103 - GFF6136 0.55 -0.1 38,192 + GFF6136 0.64 +0.9 38,192 + GFF6136 0.64 -0.3 38,192 + GFF6136 0.64 -0.4 38,192 + GFF6136 0.64 +0.5 38,193 - GFF6136 0.64 -0.1 38,193 - GFF6136 0.64 -0.2 38,195 + GFF6136 0.64 -0.3 38,195 + GFF6136 0.64 +0.3 38,195 + GFF6136 0.64 -0.8 38,195 + GFF6136 0.64 +0.3 38,195 + GFF6136 0.64 -0.6 38,195 + GFF6136 0.64 -0.6 38,195 + GFF6136 0.64 -0.1 38,195 + GFF6136 0.64 -1.1 38,196 - GFF6136 0.64 -0.1 38,196 - GFF6136 0.64 -0.2 38,196 - GFF6136 0.64 +1.1 38,196 - GFF6136 0.64 -0.9 38,196 - GFF6136 0.64 -1.2 38,196 - GFF6136 0.64 -1.5 38,196 - GFF6136 0.64 +0.6 38,196 - GFF6136 0.64 -0.1 38,198 + GFF6136 0.64 -0.1 38,198 + GFF6136 0.64 -0.1 38,198 + GFF6136 0.64 -1.7 38,198 + GFF6136 0.64 -1.3 38,199 - GFF6136 0.64 -2.4 38,199 - GFF6136 0.64 -0.2 38,199 - GFF6136 0.64 +0.0 38,199 - GFF6136 0.64 +1.2 38,201 + GFF6136 0.65 -0.1 38,202 - GFF6136 0.65 +0.2
Or see this region's nucleotide sequence