Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF612 and GFF613 are separated by 79 nucleotides GFF613 and GFF614 overlap by 4 nucleotides GFF614 and GFF615 are separated by 76 nucleotides
GFF612 - hypothetical protein, at 660,122 to 661,069
GFF612
GFF613 - hypothetical protein, at 661,149 to 662,114
GFF613
GFF614 - no description, at 662,111 to 662,281
GFF614
GFF615 - beta-glucosidase (EC 3.2.1.21), at 662,358 to 664,643
GFF615
Position (kb) 661
662
663 Strain fitness (log2 ratio) -2
-1
0
1 at 660.319 kb on + strand, within GFF612 at 660.324 kb on - strand, within GFF612 at 660.324 kb on - strand, within GFF612 at 660.413 kb on - strand, within GFF612 at 660.413 kb on - strand, within GFF612 at 660.417 kb on - strand, within GFF612 at 660.419 kb on + strand, within GFF612 at 660.437 kb on - strand, within GFF612 at 660.437 kb on - strand, within GFF612 at 660.605 kb on - strand, within GFF612 at 660.605 kb on - strand, within GFF612 at 660.705 kb on - strand, within GFF612 at 660.706 kb on + strand, within GFF612 at 660.706 kb on + strand, within GFF612 at 660.707 kb on - strand, within GFF612 at 661.210 kb on + strand at 661.210 kb on + strand at 661.210 kb on + strand at 661.210 kb on + strand at 661.210 kb on + strand at 661.211 kb on - strand at 661.211 kb on - strand at 661.211 kb on - strand at 661.211 kb on - strand at 661.351 kb on - strand, within GFF613 at 661.351 kb on - strand, within GFF613 at 661.351 kb on - strand, within GFF613 at 661.395 kb on + strand, within GFF613 at 661.396 kb on - strand, within GFF613 at 661.443 kb on + strand, within GFF613 at 661.443 kb on + strand, within GFF613 at 661.444 kb on - strand, within GFF613 at 661.444 kb on - strand, within GFF613 at 661.446 kb on + strand, within GFF613 at 661.446 kb on + strand, within GFF613 at 661.447 kb on - strand, within GFF613 at 661.548 kb on - strand, within GFF613 at 661.605 kb on + strand, within GFF613 at 662.090 kb on - strand at 662.095 kb on + strand at 662.095 kb on + strand at 662.095 kb on + strand at 662.095 kb on + strand at 662.095 kb on + strand at 662.095 kb on + strand at 662.095 kb on + strand at 662.095 kb on + strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.296 kb on - strand at 662.350 kb on - strand at 663.039 kb on + strand, within GFF615 at 663.066 kb on + strand, within GFF615 at 663.109 kb on - strand, within GFF615
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 660,319 + GFF612 0.21 +0.2 660,324 - GFF612 0.21 -2.2 660,324 - GFF612 0.21 +1.0 660,413 - GFF612 0.31 +0.4 660,413 - GFF612 0.31 -0.2 660,417 - GFF612 0.31 -1.1 660,419 + GFF612 0.31 -0.6 660,437 - GFF612 0.33 -0.5 660,437 - GFF612 0.33 +0.5 660,605 - GFF612 0.51 +0.4 660,605 - GFF612 0.51 +0.8 660,705 - GFF612 0.61 +0.1 660,706 + GFF612 0.62 -0.2 660,706 + GFF612 0.62 -0.4 660,707 - GFF612 0.62 -0.3 661,210 + +0.3 661,210 + -0.5 661,210 + -1.5 661,210 + -1.7 661,210 + +0.5 661,211 - -1.5 661,211 - -0.3 661,211 - -0.0 661,211 - -0.1 661,351 - GFF613 0.21 +0.0 661,351 - GFF613 0.21 -1.9 661,351 - GFF613 0.21 +0.1 661,395 + GFF613 0.25 +0.3 661,396 - GFF613 0.26 -1.6 661,443 + GFF613 0.30 -0.6 661,443 + GFF613 0.30 -0.0 661,444 - GFF613 0.31 -1.0 661,444 - GFF613 0.31 -1.1 661,446 + GFF613 0.31 -0.6 661,446 + GFF613 0.31 -0.2 661,447 - GFF613 0.31 -1.0 661,548 - GFF613 0.41 -0.1 661,605 + GFF613 0.47 +0.8 662,090 - +0.2 662,095 + -1.0 662,095 + -0.9 662,095 + +0.9 662,095 + +0.3 662,095 + -1.1 662,095 + -0.4 662,095 + -0.2 662,095 + +0.1 662,096 - +0.3 662,096 - +0.8 662,096 - +0.1 662,096 - -0.3 662,096 - -0.5 662,096 - -1.5 662,096 - -0.2 662,096 - -1.0 662,096 - -0.4 662,096 - -0.2 662,096 - -0.1 662,096 - +0.1 662,296 - -1.1 662,350 - -0.8 663,039 + GFF615 0.30 -0.5 663,066 + GFF615 0.31 -1.5 663,109 - GFF615 0.33 -0.1
Or see this region's nucleotide sequence