Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5995 and GFF5996 overlap by 4 nucleotides GFF5996 and GFF5997 are separated by 19 nucleotides GFF5997 and GFF5998 are separated by 103 nucleotides
GFF5995 - LysR family transcriptional regulator STM3121, at 54,148 to 55,083
GFF5995
GFF5996 - BUG/TctC family periplasmic protein, at 55,080 to 56,075
GFF5996
GFF5997 - hypothetical protein, at 56,095 to 56,664
GFF5997
GFF5998 - Uncharacterized protein YiiX, at 56,768 to 57,394
GFF5998
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.088 kb on + strand at 54.088 kb on + strand at 54.088 kb on + strand at 54.088 kb on + strand at 54.104 kb on + strand at 54.104 kb on + strand at 54.104 kb on + strand at 54.105 kb on - strand at 54.115 kb on - strand at 54.119 kb on + strand at 54.119 kb on + strand at 54.120 kb on - strand at 54.145 kb on + strand at 54.145 kb on + strand at 54.155 kb on + strand at 54.155 kb on + strand at 54.155 kb on + strand at 54.155 kb on + strand at 54.155 kb on + strand at 54.156 kb on - strand at 54.156 kb on - strand at 54.169 kb on + strand at 54.169 kb on + strand at 54.775 kb on + strand, within GFF5995 at 54.775 kb on + strand, within GFF5995 at 54.776 kb on - strand, within GFF5995 at 54.934 kb on + strand, within GFF5995 at 54.934 kb on + strand, within GFF5995 at 54.934 kb on + strand, within GFF5995 at 55.086 kb on - strand at 55.212 kb on + strand, within GFF5996 at 55.212 kb on + strand, within GFF5996 at 55.212 kb on + strand, within GFF5996 at 55.213 kb on - strand, within GFF5996 at 55.213 kb on - strand, within GFF5996 at 55.213 kb on - strand, within GFF5996 at 55.213 kb on - strand, within GFF5996 at 55.426 kb on - strand, within GFF5996 at 55.737 kb on + strand, within GFF5996 at 55.737 kb on + strand, within GFF5996 at 55.737 kb on + strand, within GFF5996 at 55.738 kb on - strand, within GFF5996 at 55.968 kb on + strand, within GFF5996 at 55.968 kb on + strand, within GFF5996 at 55.968 kb on + strand, within GFF5996 at 55.968 kb on + strand, within GFF5996 at 55.969 kb on - strand, within GFF5996 at 55.969 kb on - strand, within GFF5996 at 55.969 kb on - strand, within GFF5996 at 56.085 kb on + strand at 56.086 kb on - strand at 56.086 kb on - strand at 56.166 kb on - strand, within GFF5997 at 56.186 kb on + strand, within GFF5997 at 56.186 kb on + strand, within GFF5997 at 56.187 kb on - strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.193 kb on - strand, within GFF5997 at 56.216 kb on + strand, within GFF5997 at 56.216 kb on + strand, within GFF5997 at 56.217 kb on - strand, within GFF5997 at 56.511 kb on - strand, within GFF5997 at 56.511 kb on - strand, within GFF5997 at 56.511 kb on - strand, within GFF5997 at 56.934 kb on - strand, within GFF5998 at 57.006 kb on - strand, within GFF5998 at 57.050 kb on + strand, within GFF5998 at 57.051 kb on - strand, within GFF5998 at 57.051 kb on - strand, within GFF5998
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 54,088 + +0.3 54,088 + +0.1 54,088 + +1.3 54,088 + -0.1 54,104 + +1.1 54,104 + -1.7 54,104 + -0.1 54,105 - +0.4 54,115 - -0.0 54,119 + +0.5 54,119 + +0.3 54,120 - +1.6 54,145 + +0.4 54,145 + -0.7 54,155 + +0.4 54,155 + -0.6 54,155 + -0.5 54,155 + -1.0 54,155 + -0.2 54,156 - +1.0 54,156 - -0.2 54,169 + +1.4 54,169 + -0.9 54,775 + GFF5995 0.67 -2.4 54,775 + GFF5995 0.67 -1.5 54,776 - GFF5995 0.67 -0.2 54,934 + GFF5995 0.84 +0.1 54,934 + GFF5995 0.84 +0.8 54,934 + GFF5995 0.84 -0.2 55,086 - -0.2 55,212 + GFF5996 0.13 -0.1 55,212 + GFF5996 0.13 +1.0 55,212 + GFF5996 0.13 -0.0 55,213 - GFF5996 0.13 -0.2 55,213 - GFF5996 0.13 +0.5 55,213 - GFF5996 0.13 -0.4 55,213 - GFF5996 0.13 -0.3 55,426 - GFF5996 0.35 +0.6 55,737 + GFF5996 0.66 +0.6 55,737 + GFF5996 0.66 -0.7 55,737 + GFF5996 0.66 -0.4 55,738 - GFF5996 0.66 +0.3 55,968 + GFF5996 0.89 +1.3 55,968 + GFF5996 0.89 +0.1 55,968 + GFF5996 0.89 -1.3 55,968 + GFF5996 0.89 +0.3 55,969 - GFF5996 0.89 -0.4 55,969 - GFF5996 0.89 -0.3 55,969 - GFF5996 0.89 +0.7 56,085 + -1.2 56,086 - +0.1 56,086 - -0.8 56,166 - GFF5997 0.12 -0.4 56,186 + GFF5997 0.16 +2.2 56,186 + GFF5997 0.16 -0.0 56,187 - GFF5997 0.16 +0.3 56,192 + GFF5997 0.17 -0.5 56,192 + GFF5997 0.17 +0.0 56,192 + GFF5997 0.17 -0.4 56,192 + GFF5997 0.17 -0.9 56,192 + GFF5997 0.17 -1.2 56,193 - GFF5997 0.17 -0.9 56,216 + GFF5997 0.21 -0.7 56,216 + GFF5997 0.21 -0.5 56,217 - GFF5997 0.21 +0.7 56,511 - GFF5997 0.73 -0.1 56,511 - GFF5997 0.73 +0.1 56,511 - GFF5997 0.73 -1.0 56,934 - GFF5998 0.26 +0.3 57,006 - GFF5998 0.38 +0.3 57,050 + GFF5998 0.45 -0.7 57,051 - GFF5998 0.45 -1.2 57,051 - GFF5998 0.45 -0.6
Or see this region's nucleotide sequence