Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5907 and GFF5908 are separated by 2 nucleotides GFF5908 and GFF5909 overlap by 4 nucleotides GFF5909 and GFF5910 overlap by 10 nucleotides GFF5910 and GFF5911 are separated by 37 nucleotides
GFF5907 - Biotin synthase-related enzyme, at 123,055 to 124,137
GFF5907
GFF5908 - Histone acetyltransferase HPA2 and related acetyltransferases, at 124,140 to 124,700
GFF5908
GFF5909 - Selenophosphate synthetase-related protein MJ0640, at 124,697 to 125,704
GFF5909
GFF5910 - NAD/NADP transhydrogenase alpha subunit, at 125,695 to 125,979
GFF5910
GFF5911 - Probable L-amino-acid oxidase (EC 1.4.3.2), at 126,017 to 127,324
GFF5911
Position (kb) 124
125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 123.853 kb on + strand, within GFF5907 at 123.853 kb on + strand, within GFF5907 at 124.112 kb on + strand at 124.114 kb on + strand at 124.114 kb on + strand at 124.115 kb on - strand at 124.180 kb on - strand at 124.195 kb on - strand at 124.877 kb on + strand, within GFF5909 at 124.944 kb on - strand, within GFF5909 at 124.976 kb on + strand, within GFF5909 at 124.976 kb on + strand, within GFF5909 at 124.976 kb on + strand, within GFF5909 at 124.977 kb on - strand, within GFF5909 at 124.977 kb on - strand, within GFF5909 at 124.977 kb on - strand, within GFF5909 at 125.235 kb on - strand, within GFF5909 at 125.798 kb on - strand, within GFF5910 at 126.048 kb on - strand at 126.407 kb on + strand, within GFF5911 at 126.516 kb on - strand, within GFF5911 at 126.516 kb on - strand, within GFF5911 at 126.659 kb on + strand, within GFF5911 at 126.660 kb on - strand, within GFF5911 at 126.701 kb on + strand, within GFF5911 at 126.702 kb on - strand, within GFF5911 at 126.702 kb on - strand, within GFF5911 at 126.702 kb on - strand, within GFF5911 at 126.704 kb on + strand, within GFF5911 at 126.704 kb on + strand, within GFF5911
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 123,853 + GFF5907 0.74 -1.0 123,853 + GFF5907 0.74 +0.1 124,112 + -0.6 124,114 + -1.1 124,114 + -0.7 124,115 - -0.5 124,180 - -0.3 124,195 - -1.0 124,877 + GFF5909 0.18 -0.2 124,944 - GFF5909 0.25 -0.1 124,976 + GFF5909 0.28 -0.8 124,976 + GFF5909 0.28 -2.8 124,976 + GFF5909 0.28 -1.1 124,977 - GFF5909 0.28 -0.8 124,977 - GFF5909 0.28 -0.5 124,977 - GFF5909 0.28 +0.8 125,235 - GFF5909 0.53 -0.3 125,798 - GFF5910 0.36 +0.7 126,048 - -2.0 126,407 + GFF5911 0.30 -0.4 126,516 - GFF5911 0.38 -0.3 126,516 - GFF5911 0.38 -0.3 126,659 + GFF5911 0.49 -0.7 126,660 - GFF5911 0.49 -0.0 126,701 + GFF5911 0.52 +1.0 126,702 - GFF5911 0.52 -0.9 126,702 - GFF5911 0.52 -0.4 126,702 - GFF5911 0.52 +0.8 126,704 + GFF5911 0.53 +0.3 126,704 + GFF5911 0.53 -0.3
Or see this region's nucleotide sequence