Strain Fitness in Variovorax sp. SCN45 around GFF59

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF58 and GFF59 overlap by 4 nucleotidesGFF59 and GFF60 are separated by 66 nucleotides GFF58 - Tyrosine-protein kinase (EC 2.7.10.2), at 72,966 to 75,230 GFF58 GFF59 - Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6), at 75,227 to 75,928 GFF59 GFF60 - GDP-L-fucose synthetase (EC 1.1.1.271), at 75,995 to 76,942 GFF60 Position (kb) 75 76Strain fitness (log2 ratio) -2 -1 0 1at 74.409 kb on + strand, within GFF58at 74.409 kb on + strand, within GFF58at 74.410 kb on - strand, within GFF58at 74.410 kb on - strand, within GFF58at 74.791 kb on - strand, within GFF58at 74.934 kb on - strand, within GFF58at 75.121 kb on - strandat 75.127 kb on - strandat 75.136 kb on - strandat 75.294 kb on - strandat 75.390 kb on - strand, within GFF59at 75.399 kb on + strand, within GFF59at 75.440 kb on + strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.575 kb on + strand, within GFF59at 75.576 kb on - strand, within GFF59at 75.632 kb on + strand, within GFF59at 75.633 kb on - strand, within GFF59at 75.633 kb on - strand, within GFF59at 75.633 kb on - strand, within GFF59at 75.633 kb on - strand, within GFF59at 75.728 kb on + strand, within GFF59at 75.737 kb on + strand, within GFF59at 75.738 kb on - strand, within GFF59at 75.738 kb on - strand, within GFF59at 75.750 kb on - strand, within GFF59at 75.812 kb on + strand, within GFF59at 75.813 kb on - strand, within GFF59at 75.843 kb on - strand, within GFF59at 75.843 kb on - strand, within GFF59at 75.965 kb on - strandat 76.130 kb on + strand, within GFF60at 76.130 kb on + strand, within GFF60at 76.130 kb on + strand, within GFF60at 76.131 kb on - strand, within GFF60at 76.131 kb on - strand, within GFF60at 76.175 kb on + strand, within GFF60at 76.176 kb on - strand, within GFF60at 76.193 kb on + strand, within GFF60at 76.194 kb on - strand, within GFF60at 76.283 kb on + strand, within GFF60at 76.283 kb on + strand, within GFF60at 76.283 kb on + strand, within GFF60at 76.283 kb on + strand, within GFF60at 76.284 kb on - strand, within GFF60at 76.358 kb on + strand, within GFF60at 76.359 kb on - strand, within GFF60at 76.400 kb on + strand, within GFF60at 76.400 kb on + strand, within GFF60at 76.400 kb on + strand, within GFF60at 76.436 kb on + strand, within GFF60at 76.437 kb on - strand, within GFF60at 76.464 kb on - strand, within GFF60at 76.481 kb on + strand, within GFF60at 76.481 kb on + strand, within GFF60at 76.482 kb on - strand, within GFF60at 76.482 kb on - strand, within GFF60at 76.482 kb on - strand, within GFF60at 76.601 kb on + strand, within GFF60at 76.601 kb on + strand, within GFF60at 76.659 kb on - strand, within GFF60

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
74,409 + GFF58 0.64 +0.3
74,409 + GFF58 0.64 +0.3
74,410 - GFF58 0.64 +0.4
74,410 - GFF58 0.64 +0.0
74,791 - GFF58 0.81 -0.9
74,934 - GFF58 0.87 +0.1
75,121 - -0.3
75,127 - -0.7
75,136 - -0.3
75,294 - +0.5
75,390 - GFF59 0.23 +0.8
75,399 + GFF59 0.25 -0.2
75,440 + GFF59 0.30 -0.5
75,441 - GFF59 0.30 +0.1
75,441 - GFF59 0.30 +0.1
75,441 - GFF59 0.30 +0.9
75,441 - GFF59 0.30 -1.0
75,441 - GFF59 0.30 +0.5
75,441 - GFF59 0.30 -0.6
75,441 - GFF59 0.30 +0.2
75,441 - GFF59 0.30 +0.1
75,575 + GFF59 0.50 -0.9
75,576 - GFF59 0.50 -0.4
75,632 + GFF59 0.58 +0.7
75,633 - GFF59 0.58 -1.5
75,633 - GFF59 0.58 -0.2
75,633 - GFF59 0.58 -0.7
75,633 - GFF59 0.58 +0.0
75,728 + GFF59 0.71 +0.1
75,737 + GFF59 0.73 +0.0
75,738 - GFF59 0.73 -0.1
75,738 - GFF59 0.73 +0.1
75,750 - GFF59 0.75 -0.2
75,812 + GFF59 0.83 +0.7
75,813 - GFF59 0.83 +0.9
75,843 - GFF59 0.88 -0.3
75,843 - GFF59 0.88 -0.3
75,965 - -1.0
76,130 + GFF60 0.14 -0.6
76,130 + GFF60 0.14 -1.1
76,130 + GFF60 0.14 +0.5
76,131 - GFF60 0.14 +0.7
76,131 - GFF60 0.14 -0.4
76,175 + GFF60 0.19 -0.6
76,176 - GFF60 0.19 +0.5
76,193 + GFF60 0.21 +0.1
76,194 - GFF60 0.21 -2.0
76,283 + GFF60 0.30 -0.5
76,283 + GFF60 0.30 +1.3
76,283 + GFF60 0.30 +0.0
76,283 + GFF60 0.30 -0.8
76,284 - GFF60 0.30 -0.4
76,358 + GFF60 0.38 -0.1
76,359 - GFF60 0.38 -0.3
76,400 + GFF60 0.43 -0.1
76,400 + GFF60 0.43 -1.4
76,400 + GFF60 0.43 -1.2
76,436 + GFF60 0.47 +0.3
76,437 - GFF60 0.47 -0.1
76,464 - GFF60 0.49 -0.8
76,481 + GFF60 0.51 -0.3
76,481 + GFF60 0.51 +0.7
76,482 - GFF60 0.51 +0.6
76,482 - GFF60 0.51 +0.3
76,482 - GFF60 0.51 -1.3
76,601 + GFF60 0.64 -2.1
76,601 + GFF60 0.64 +0.2
76,659 - GFF60 0.70 -0.7

Or see this region's nucleotide sequence