Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF582 and GFF583 are separated by 156 nucleotides GFF583 and GFF584 are separated by 4 nucleotides
GFF582 - Two-component system sensor histidine kinase, at 629,207 to 630,754
GFF582
GFF583 - Tripartite tricarboxylate transporter TctB family, at 630,911 to 631,435
GFF583
GFF584 - Tripartite tricarboxylate transporter TctA family, at 631,440 to 633,014
GFF584
Position (kb) 630
631
632 Strain fitness (log2 ratio) -2
-1
0
1
2 at 630.278 kb on + strand, within GFF582 at 630.278 kb on + strand, within GFF582 at 630.278 kb on + strand, within GFF582 at 630.278 kb on + strand, within GFF582 at 630.278 kb on + strand, within GFF582 at 630.278 kb on + strand, within GFF582 at 630.279 kb on - strand, within GFF582 at 630.279 kb on - strand, within GFF582 at 630.449 kb on + strand, within GFF582 at 630.449 kb on + strand, within GFF582 at 630.449 kb on + strand, within GFF582 at 630.449 kb on + strand, within GFF582 at 630.450 kb on - strand, within GFF582 at 630.450 kb on - strand, within GFF582 at 630.450 kb on - strand, within GFF582 at 630.450 kb on - strand, within GFF582 at 630.780 kb on - strand at 630.794 kb on + strand at 630.795 kb on - strand at 630.802 kb on + strand at 630.802 kb on + strand at 630.802 kb on + strand at 630.802 kb on + strand at 630.810 kb on + strand at 630.810 kb on + strand at 630.810 kb on + strand at 630.810 kb on + strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.816 kb on + strand at 630.816 kb on + strand at 630.878 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.983 kb on + strand, within GFF583 at 630.983 kb on + strand, within GFF583 at 630.984 kb on - strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.026 kb on - strand, within GFF583 at 631.026 kb on - strand, within GFF583 at 631.026 kb on - strand, within GFF583 at 631.456 kb on + strand at 631.456 kb on + strand at 631.457 kb on - strand at 631.457 kb on - strand at 631.583 kb on + strand at 631.583 kb on + strand at 631.583 kb on + strand at 631.584 kb on - strand at 631.584 kb on - strand at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.603 kb on - strand, within GFF584 at 631.603 kb on - strand, within GFF584 at 631.650 kb on + strand, within GFF584 at 631.650 kb on + strand, within GFF584 at 631.651 kb on - strand, within GFF584 at 631.651 kb on - strand, within GFF584 at 631.651 kb on - strand, within GFF584 at 631.663 kb on - strand, within GFF584 at 632.283 kb on + strand, within GFF584 at 632.284 kb on - strand, within GFF584 at 632.284 kb on - strand, within GFF584
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 630,278 + GFF582 0.69 -0.5 630,278 + GFF582 0.69 -0.6 630,278 + GFF582 0.69 -0.3 630,278 + GFF582 0.69 -0.0 630,278 + GFF582 0.69 -0.7 630,278 + GFF582 0.69 -0.2 630,279 - GFF582 0.69 -0.7 630,279 - GFF582 0.69 -0.2 630,449 + GFF582 0.80 -0.0 630,449 + GFF582 0.80 -0.1 630,449 + GFF582 0.80 +0.1 630,449 + GFF582 0.80 +1.9 630,450 - GFF582 0.80 +0.1 630,450 - GFF582 0.80 -1.1 630,450 - GFF582 0.80 -1.5 630,450 - GFF582 0.80 -0.3 630,780 - -0.0 630,794 + +0.5 630,795 - +1.3 630,802 + -0.0 630,802 + -0.8 630,802 + -0.3 630,802 + +0.9 630,810 + -1.2 630,810 + -0.0 630,810 + -0.5 630,810 + +0.1 630,811 - -0.8 630,811 - -0.2 630,811 - -0.0 630,811 - -0.3 630,811 - +0.4 630,811 - -0.1 630,811 - -0.1 630,811 - -1.4 630,811 - -0.1 630,811 - -0.9 630,811 - -1.5 630,811 - -1.6 630,816 + -1.6 630,816 + +0.2 630,878 + +0.5 630,910 + -0.1 630,910 + -1.0 630,910 + +0.6 630,910 + -0.6 630,910 + +0.1 630,910 + -0.2 630,910 + -0.2 630,910 + -0.1 630,910 + -0.0 630,910 + -0.3 630,910 + -0.2 630,910 + -0.5 630,910 + -0.6 630,910 + -0.2 630,910 + -0.0 630,911 - +0.1 630,911 - -0.2 630,911 - -0.8 630,911 - +0.5 630,911 - +0.3 630,911 - -2.5 630,911 - +1.3 630,911 - +0.8 630,911 - +0.2 630,911 - +1.0 630,911 - -0.6 630,911 - -0.6 630,911 - -0.2 630,911 - +0.0 630,911 - +0.5 630,911 - +0.3 630,911 - -1.9 630,983 + GFF583 0.14 -1.0 630,983 + GFF583 0.14 +0.2 630,984 - GFF583 0.14 -0.4 631,025 + GFF583 0.22 +0.3 631,025 + GFF583 0.22 +0.2 631,025 + GFF583 0.22 -0.7 631,025 + GFF583 0.22 -0.3 631,025 + GFF583 0.22 +0.1 631,026 - GFF583 0.22 -0.4 631,026 - GFF583 0.22 +0.4 631,026 - GFF583 0.22 +0.7 631,456 + -0.2 631,456 + -0.6 631,457 - -2.4 631,457 - -0.7 631,583 + -0.3 631,583 + +0.1 631,583 + -0.0 631,584 - -1.1 631,584 - -0.0 631,602 + GFF584 0.10 +0.3 631,602 + GFF584 0.10 -0.1 631,602 + GFF584 0.10 -0.8 631,602 + GFF584 0.10 -0.3 631,602 + GFF584 0.10 -0.5 631,602 + GFF584 0.10 +0.8 631,603 - GFF584 0.10 -0.9 631,603 - GFF584 0.10 -0.8 631,650 + GFF584 0.13 -0.4 631,650 + GFF584 0.13 -0.3 631,651 - GFF584 0.13 +0.7 631,651 - GFF584 0.13 +0.5 631,651 - GFF584 0.13 -0.2 631,663 - GFF584 0.14 -0.0 632,283 + GFF584 0.54 +0.0 632,284 - GFF584 0.54 -1.0 632,284 - GFF584 0.54 -1.6
Or see this region's nucleotide sequence