Strain Fitness in Variovorax sp. SCN45 around GFF5793

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5792 and GFF5793 are separated by 10 nucleotidesGFF5793 and GFF5794 are separated by 145 nucleotides GFF5792 - Mg2+ and Co2+ transporters, at 166,886 to 167,929 GFF5792 GFF5793 - Low-affinity inorganic phosphate transporter, at 167,940 to 169,577 GFF5793 GFF5794 - Polyphosphate kinase 2 (EC 2.7.4.1), at 169,723 to 170,649 GFF5794 Position (kb) 167 168 169 170Strain fitness (log2 ratio) -2 -1 0 1at 166.940 kb on + strandat 166.941 kb on - strandat 167.102 kb on + strand, within GFF5792at 167.670 kb on + strand, within GFF5792at 167.671 kb on - strand, within GFF5792at 167.751 kb on + strand, within GFF5792at 167.751 kb on + strand, within GFF5792at 167.862 kb on + strandat 167.895 kb on + strandat 167.895 kb on + strandat 167.896 kb on - strandat 167.965 kb on + strandat 167.965 kb on + strandat 168.121 kb on + strand, within GFF5793at 168.121 kb on + strand, within GFF5793at 168.121 kb on + strand, within GFF5793at 168.121 kb on + strand, within GFF5793at 168.121 kb on + strand, within GFF5793at 168.121 kb on + strand, within GFF5793at 168.122 kb on - strand, within GFF5793at 168.122 kb on - strand, within GFF5793at 168.122 kb on - strand, within GFF5793at 168.122 kb on - strand, within GFF5793at 168.122 kb on - strand, within GFF5793at 168.122 kb on - strand, within GFF5793at 168.122 kb on - strand, within GFF5793at 168.182 kb on - strand, within GFF5793at 168.412 kb on + strand, within GFF5793at 168.412 kb on + strand, within GFF5793at 168.412 kb on + strand, within GFF5793at 168.412 kb on + strand, within GFF5793at 168.412 kb on + strand, within GFF5793at 168.412 kb on + strand, within GFF5793at 168.412 kb on + strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.549 kb on + strand, within GFF5793at 168.549 kb on + strand, within GFF5793at 168.549 kb on + strand, within GFF5793at 168.549 kb on + strand, within GFF5793at 168.549 kb on + strand, within GFF5793at 168.550 kb on - strand, within GFF5793at 168.550 kb on - strand, within GFF5793at 168.550 kb on - strand, within GFF5793at 168.550 kb on - strand, within GFF5793at 168.553 kb on + strand, within GFF5793at 168.554 kb on - strand, within GFF5793at 168.853 kb on + strand, within GFF5793at 168.853 kb on + strand, within GFF5793at 168.854 kb on - strand, within GFF5793at 168.854 kb on - strand, within GFF5793at 168.943 kb on + strand, within GFF5793at 169.283 kb on - strand, within GFF5793at 169.283 kb on - strand, within GFF5793at 169.650 kb on + strandat 169.650 kb on + strandat 169.650 kb on + strandat 169.651 kb on - strandat 169.651 kb on - strandat 169.673 kb on + strandat 169.673 kb on + strandat 169.673 kb on + strandat 169.673 kb on + strandat 169.673 kb on + strandat 169.673 kb on + strandat 169.673 kb on + strandat 169.673 kb on + strandat 169.674 kb on - strandat 169.674 kb on - strandat 169.793 kb on - strandat 169.793 kb on - strandat 169.793 kb on - strandat 169.894 kb on + strand, within GFF5794at 169.894 kb on + strand, within GFF5794at 169.895 kb on - strand, within GFF5794at 169.895 kb on - strand, within GFF5794at 169.970 kb on + strand, within GFF5794at 169.971 kb on - strand, within GFF5794at 169.971 kb on - strand, within GFF5794at 169.971 kb on - strand, within GFF5794at 169.971 kb on - strand, within GFF5794at 170.104 kb on + strand, within GFF5794at 170.105 kb on - strand, within GFF5794at 170.105 kb on - strand, within GFF5794at 170.105 kb on - strand, within GFF5794at 170.105 kb on - strand, within GFF5794at 170.116 kb on + strand, within GFF5794at 170.116 kb on + strand, within GFF5794at 170.117 kb on - strand, within GFF5794at 170.293 kb on + strand, within GFF5794at 170.293 kb on + strand, within GFF5794at 170.294 kb on - strand, within GFF5794at 170.411 kb on + strand, within GFF5794at 170.413 kb on + strand, within GFF5794at 170.413 kb on + strand, within GFF5794at 170.413 kb on + strand, within GFF5794at 170.413 kb on + strand, within GFF5794at 170.413 kb on + strand, within GFF5794at 170.414 kb on - strand, within GFF5794at 170.414 kb on - strand, within GFF5794at 170.414 kb on - strand, within GFF5794

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
166,940 + +0.4
166,941 - -1.0
167,102 + GFF5792 0.21 +1.6
167,670 + GFF5792 0.75 -0.0
167,671 - GFF5792 0.75 -0.2
167,751 + GFF5792 0.83 -0.3
167,751 + GFF5792 0.83 -0.2
167,862 + -0.5
167,895 + -0.4
167,895 + +0.0
167,896 - +0.1
167,965 + -0.3
167,965 + -0.5
168,121 + GFF5793 0.11 +0.4
168,121 + GFF5793 0.11 +0.0
168,121 + GFF5793 0.11 -0.1
168,121 + GFF5793 0.11 -0.1
168,121 + GFF5793 0.11 -0.4
168,121 + GFF5793 0.11 -0.3
168,122 - GFF5793 0.11 -0.8
168,122 - GFF5793 0.11 -1.6
168,122 - GFF5793 0.11 -2.1
168,122 - GFF5793 0.11 -0.9
168,122 - GFF5793 0.11 -1.2
168,122 - GFF5793 0.11 -0.5
168,122 - GFF5793 0.11 -0.3
168,182 - GFF5793 0.15 -0.2
168,412 + GFF5793 0.29 -0.6
168,412 + GFF5793 0.29 -0.4
168,412 + GFF5793 0.29 -0.0
168,412 + GFF5793 0.29 +1.2
168,412 + GFF5793 0.29 -0.0
168,412 + GFF5793 0.29 -0.0
168,412 + GFF5793 0.29 -1.1
168,413 - GFF5793 0.29 -0.6
168,413 - GFF5793 0.29 -1.3
168,413 - GFF5793 0.29 -0.2
168,413 - GFF5793 0.29 +0.4
168,413 - GFF5793 0.29 -0.3
168,413 - GFF5793 0.29 -1.0
168,413 - GFF5793 0.29 +0.4
168,413 - GFF5793 0.29 -0.7
168,413 - GFF5793 0.29 -1.1
168,413 - GFF5793 0.29 +0.2
168,413 - GFF5793 0.29 -1.0
168,413 - GFF5793 0.29 -0.2
168,413 - GFF5793 0.29 +0.0
168,413 - GFF5793 0.29 -0.3
168,549 + GFF5793 0.37 -0.5
168,549 + GFF5793 0.37 -0.2
168,549 + GFF5793 0.37 +0.2
168,549 + GFF5793 0.37 -1.5
168,549 + GFF5793 0.37 +0.4
168,550 - GFF5793 0.37 +0.3
168,550 - GFF5793 0.37 +0.1
168,550 - GFF5793 0.37 +0.9
168,550 - GFF5793 0.37 -0.5
168,553 + GFF5793 0.37 -2.4
168,554 - GFF5793 0.37 +0.0
168,853 + GFF5793 0.56 -0.5
168,853 + GFF5793 0.56 +0.7
168,854 - GFF5793 0.56 -0.4
168,854 - GFF5793 0.56 -0.3
168,943 + GFF5793 0.61 -0.0
169,283 - GFF5793 0.82 +0.2
169,283 - GFF5793 0.82 -0.1
169,650 + -1.2
169,650 + -1.4
169,650 + -0.3
169,651 - -0.5
169,651 - -1.0
169,673 + -0.4
169,673 + +0.3
169,673 + -1.4
169,673 + +0.5
169,673 + +0.0
169,673 + -0.3
169,673 + +0.0
169,673 + -0.5
169,674 - -0.3
169,674 - +0.7
169,793 - -0.1
169,793 - -1.9
169,793 - -0.5
169,894 + GFF5794 0.18 -0.7
169,894 + GFF5794 0.18 +0.0
169,895 - GFF5794 0.19 -0.5
169,895 - GFF5794 0.19 -0.6
169,970 + GFF5794 0.27 +0.1
169,971 - GFF5794 0.27 -0.8
169,971 - GFF5794 0.27 +0.6
169,971 - GFF5794 0.27 +0.4
169,971 - GFF5794 0.27 +0.8
170,104 + GFF5794 0.41 -1.2
170,105 - GFF5794 0.41 -0.3
170,105 - GFF5794 0.41 -0.6
170,105 - GFF5794 0.41 +0.4
170,105 - GFF5794 0.41 +0.0
170,116 + GFF5794 0.42 -1.6
170,116 + GFF5794 0.42 -0.8
170,117 - GFF5794 0.43 +0.1
170,293 + GFF5794 0.61 -1.3
170,293 + GFF5794 0.61 -1.1
170,294 - GFF5794 0.62 -0.6
170,411 + GFF5794 0.74 +0.0
170,413 + GFF5794 0.74 -1.4
170,413 + GFF5794 0.74 +0.3
170,413 + GFF5794 0.74 -0.6
170,413 + GFF5794 0.74 +0.0
170,413 + GFF5794 0.74 -0.2
170,414 - GFF5794 0.75 +0.4
170,414 - GFF5794 0.75 -0.5
170,414 - GFF5794 0.75 -1.4

Or see this region's nucleotide sequence