Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5767 and GFF5768 are separated by 28 nucleotides GFF5768 and GFF5769 are separated by 1 nucleotides GFF5769 and GFF5770 are separated by 147 nucleotides
GFF5767 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 139,610 to 140,695
GFF5767
GFF5768 - Chemotaxis regulator - transmits chemoreceptor signals to flagellar motor components CheY, at 140,724 to 141,122
GFF5768
GFF5769 - Chemotaxis response - phosphatase CheZ, at 141,124 to 141,768
GFF5769
GFF5770 - Flagellar biosynthesis protein FlhB, at 141,916 to 143,070
GFF5770
Position (kb) 141
142 Strain fitness (log2 ratio) -1
0
1 at 140.309 kb on + strand, within GFF5767 at 140.315 kb on + strand, within GFF5767 at 140.316 kb on - strand, within GFF5767 at 140.316 kb on - strand, within GFF5767 at 140.316 kb on - strand, within GFF5767 at 140.316 kb on - strand, within GFF5767 at 140.366 kb on + strand, within GFF5767 at 140.366 kb on + strand, within GFF5767 at 140.367 kb on - strand, within GFF5767 at 140.448 kb on - strand, within GFF5767 at 140.650 kb on - strand at 140.720 kb on + strand at 141.298 kb on + strand, within GFF5769 at 141.299 kb on - strand, within GFF5769 at 141.479 kb on - strand, within GFF5769 at 141.766 kb on + strand at 141.833 kb on - strand at 141.887 kb on + strand at 141.888 kb on - strand at 141.888 kb on - strand at 141.888 kb on - strand at 142.456 kb on + strand, within GFF5770 at 142.456 kb on + strand, within GFF5770 at 142.457 kb on - strand, within GFF5770 at 142.457 kb on - strand, within GFF5770 at 142.561 kb on + strand, within GFF5770 at 142.562 kb on - strand, within GFF5770 at 142.562 kb on - strand, within GFF5770 at 142.750 kb on + strand, within GFF5770 at 142.750 kb on + strand, within GFF5770 at 142.751 kb on - strand, within GFF5770
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 140,309 + GFF5767 0.64 +0.2 140,315 + GFF5767 0.65 -0.5 140,316 - GFF5767 0.65 +0.3 140,316 - GFF5767 0.65 +1.6 140,316 - GFF5767 0.65 -0.3 140,316 - GFF5767 0.65 -0.4 140,366 + GFF5767 0.70 +0.4 140,366 + GFF5767 0.70 +0.3 140,367 - GFF5767 0.70 +0.7 140,448 - GFF5767 0.77 +0.4 140,650 - -1.6 140,720 + -0.1 141,298 + GFF5769 0.27 +0.0 141,299 - GFF5769 0.27 +0.1 141,479 - GFF5769 0.55 +1.3 141,766 + +1.5 141,833 - -0.3 141,887 + -0.5 141,888 - +0.4 141,888 - +0.0 141,888 - -0.5 142,456 + GFF5770 0.47 +1.0 142,456 + GFF5770 0.47 -0.6 142,457 - GFF5770 0.47 -0.2 142,457 - GFF5770 0.47 -0.1 142,561 + GFF5770 0.56 +0.0 142,562 - GFF5770 0.56 -0.7 142,562 - GFF5770 0.56 +0.4 142,750 + GFF5770 0.72 -0.0 142,750 + GFF5770 0.72 +1.4 142,751 - GFF5770 0.72 -0.3
Or see this region's nucleotide sequence