Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5698 and GFF5699 are separated by 60 nucleotides GFF5699 and GFF5700 overlap by 1 nucleotides GFF5700 and GFF5701 are separated by 108 nucleotides
GFF5698 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16) / 3'-nucleotidase (EC 3.1.3.6), at 71,894 to 73,996
GFF5698
GFF5699 - Smr domain protein, at 74,057 to 74,713
GFF5699
GFF5700 - UPF0758 family protein, at 74,713 to 75,390
GFF5700
GFF5701 - FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8), at 75,499 to 75,942
GFF5701
Position (kb) 74
75 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 73.136 kb on + strand, within GFF5698 at 73.136 kb on + strand, within GFF5698 at 73.136 kb on + strand, within GFF5698 at 73.136 kb on + strand, within GFF5698 at 73.136 kb on + strand, within GFF5698 at 73.137 kb on - strand, within GFF5698 at 73.137 kb on - strand, within GFF5698 at 73.137 kb on - strand, within GFF5698 at 73.137 kb on - strand, within GFF5698 at 73.181 kb on + strand, within GFF5698 at 73.181 kb on + strand, within GFF5698 at 73.181 kb on + strand, within GFF5698 at 73.182 kb on - strand, within GFF5698 at 73.182 kb on - strand, within GFF5698 at 73.182 kb on - strand, within GFF5698 at 73.241 kb on + strand, within GFF5698 at 73.242 kb on - strand, within GFF5698 at 73.242 kb on - strand, within GFF5698 at 73.242 kb on - strand, within GFF5698 at 73.242 kb on - strand, within GFF5698 at 73.253 kb on + strand, within GFF5698 at 73.254 kb on - strand, within GFF5698 at 73.254 kb on - strand, within GFF5698 at 73.254 kb on - strand, within GFF5698 at 73.277 kb on + strand, within GFF5698 at 73.326 kb on - strand, within GFF5698 at 73.343 kb on + strand, within GFF5698 at 73.343 kb on + strand, within GFF5698 at 73.394 kb on + strand, within GFF5698 at 73.394 kb on + strand, within GFF5698 at 73.395 kb on - strand, within GFF5698 at 73.395 kb on - strand, within GFF5698 at 73.395 kb on - strand, within GFF5698 at 73.395 kb on - strand, within GFF5698 at 73.415 kb on + strand, within GFF5698 at 73.415 kb on + strand, within GFF5698 at 73.535 kb on + strand, within GFF5698 at 73.536 kb on - strand, within GFF5698 at 73.571 kb on + strand, within GFF5698 at 73.571 kb on + strand, within GFF5698 at 73.571 kb on + strand, within GFF5698 at 73.571 kb on + strand, within GFF5698 at 73.622 kb on + strand, within GFF5698 at 73.622 kb on + strand, within GFF5698 at 73.622 kb on + strand, within GFF5698 at 73.623 kb on - strand, within GFF5698 at 73.652 kb on + strand, within GFF5698 at 73.676 kb on + strand, within GFF5698 at 73.677 kb on - strand, within GFF5698 at 73.734 kb on - strand, within GFF5698 at 73.734 kb on - strand, within GFF5698 at 73.773 kb on - strand, within GFF5698 at 73.773 kb on - strand, within GFF5698 at 73.773 kb on - strand, within GFF5698 at 73.967 kb on + strand at 73.968 kb on - strand at 73.968 kb on - strand at 73.994 kb on + strand at 73.994 kb on + strand at 74.250 kb on + strand, within GFF5699 at 74.250 kb on + strand, within GFF5699 at 74.251 kb on - strand, within GFF5699 at 74.327 kb on + strand, within GFF5699 at 74.327 kb on + strand, within GFF5699 at 74.327 kb on + strand, within GFF5699 at 74.328 kb on - strand, within GFF5699 at 74.328 kb on - strand, within GFF5699 at 74.930 kb on + strand, within GFF5700 at 75.053 kb on + strand, within GFF5700 at 75.576 kb on + strand, within GFF5701 at 75.576 kb on + strand, within GFF5701
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 73,136 + GFF5698 0.59 -0.7 73,136 + GFF5698 0.59 -0.4 73,136 + GFF5698 0.59 -0.2 73,136 + GFF5698 0.59 -0.6 73,136 + GFF5698 0.59 +0.2 73,137 - GFF5698 0.59 -1.2 73,137 - GFF5698 0.59 +0.3 73,137 - GFF5698 0.59 -0.7 73,137 - GFF5698 0.59 -0.0 73,181 + GFF5698 0.61 -0.8 73,181 + GFF5698 0.61 -1.1 73,181 + GFF5698 0.61 -0.0 73,182 - GFF5698 0.61 -0.5 73,182 - GFF5698 0.61 +0.4 73,182 - GFF5698 0.61 +0.2 73,241 + GFF5698 0.64 -2.0 73,242 - GFF5698 0.64 +0.9 73,242 - GFF5698 0.64 -1.0 73,242 - GFF5698 0.64 -1.7 73,242 - GFF5698 0.64 -2.6 73,253 + GFF5698 0.65 +0.2 73,254 - GFF5698 0.65 -0.2 73,254 - GFF5698 0.65 -0.7 73,254 - GFF5698 0.65 +0.2 73,277 + GFF5698 0.66 -0.2 73,326 - GFF5698 0.68 -0.0 73,343 + GFF5698 0.69 +0.2 73,343 + GFF5698 0.69 +0.0 73,394 + GFF5698 0.71 -0.4 73,394 + GFF5698 0.71 +1.0 73,395 - GFF5698 0.71 -1.6 73,395 - GFF5698 0.71 -0.4 73,395 - GFF5698 0.71 -0.6 73,395 - GFF5698 0.71 +0.8 73,415 + GFF5698 0.72 -0.8 73,415 + GFF5698 0.72 +0.4 73,535 + GFF5698 0.78 -0.4 73,536 - GFF5698 0.78 -0.7 73,571 + GFF5698 0.80 -1.1 73,571 + GFF5698 0.80 +0.0 73,571 + GFF5698 0.80 +0.3 73,571 + GFF5698 0.80 +3.2 73,622 + GFF5698 0.82 +0.9 73,622 + GFF5698 0.82 -0.4 73,622 + GFF5698 0.82 +0.1 73,623 - GFF5698 0.82 -1.0 73,652 + GFF5698 0.84 -1.0 73,676 + GFF5698 0.85 -0.3 73,677 - GFF5698 0.85 +1.2 73,734 - GFF5698 0.87 +0.2 73,734 - GFF5698 0.87 -0.9 73,773 - GFF5698 0.89 +0.0 73,773 - GFF5698 0.89 -0.8 73,773 - GFF5698 0.89 +0.8 73,967 + +1.1 73,968 - -1.0 73,968 - -0.5 73,994 + -0.8 73,994 + -0.2 74,250 + GFF5699 0.29 +0.3 74,250 + GFF5699 0.29 +2.6 74,251 - GFF5699 0.30 +0.4 74,327 + GFF5699 0.41 -0.1 74,327 + GFF5699 0.41 -1.7 74,327 + GFF5699 0.41 +0.5 74,328 - GFF5699 0.41 -1.8 74,328 - GFF5699 0.41 -2.0 74,930 + GFF5700 0.32 -1.6 75,053 + GFF5700 0.50 -1.1 75,576 + GFF5701 0.17 -0.3 75,576 + GFF5701 0.17 +0.3
Or see this region's nucleotide sequence