Strain Fitness in Variovorax sp. SCN45 around GFF5591

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5590 and GFF5591 are separated by 138 nucleotidesGFF5591 and GFF5592 overlap by 4 nucleotides GFF5590 - no description, at 210,055 to 210,951 GFF5590 GFF5591 - Amidohydrolase family enzyme, at 211,090 to 212,712 GFF5591 GFF5592 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 212,709 to 213,767 GFF5592 Position (kb) 211 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 210.463 kb on + strand, within GFF5590at 210.464 kb on - strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.544 kb on + strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.545 kb on - strand, within GFF5590at 210.592 kb on + strand, within GFF5590at 210.592 kb on + strand, within GFF5590at 210.592 kb on + strand, within GFF5590at 210.593 kb on - strand, within GFF5590at 210.593 kb on - strand, within GFF5590at 210.593 kb on - strand, within GFF5590at 210.928 kb on + strandat 210.929 kb on - strandat 210.929 kb on - strandat 210.950 kb on - strandat 211.025 kb on + strandat 211.025 kb on + strandat 211.026 kb on - strandat 211.106 kb on - strandat 211.492 kb on + strand, within GFF5591at 211.492 kb on + strand, within GFF5591at 211.492 kb on + strand, within GFF5591at 211.492 kb on + strand, within GFF5591at 211.492 kb on + strand, within GFF5591at 211.492 kb on + strand, within GFF5591at 211.492 kb on + strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.493 kb on - strand, within GFF5591at 211.498 kb on + strand, within GFF5591at 211.498 kb on + strand, within GFF5591at 211.498 kb on + strand, within GFF5591at 211.498 kb on + strand, within GFF5591at 211.498 kb on + strand, within GFF5591at 211.499 kb on - strand, within GFF5591at 211.499 kb on - strand, within GFF5591at 211.633 kb on + strand, within GFF5591at 211.634 kb on - strand, within GFF5591at 211.634 kb on - strand, within GFF5591at 211.634 kb on - strand, within GFF5591at 211.634 kb on - strand, within GFF5591at 211.634 kb on - strand, within GFF5591at 211.885 kb on + strand, within GFF5591at 211.885 kb on + strand, within GFF5591at 211.885 kb on + strand, within GFF5591at 211.885 kb on + strand, within GFF5591at 211.885 kb on + strand, within GFF5591at 211.885 kb on + strand, within GFF5591at 211.886 kb on - strand, within GFF5591at 211.886 kb on - strand, within GFF5591at 211.888 kb on + strand, within GFF5591at 211.888 kb on + strand, within GFF5591at 211.888 kb on + strand, within GFF5591at 211.888 kb on + strand, within GFF5591at 211.888 kb on + strand, within GFF5591at 211.889 kb on - strand, within GFF5591at 211.889 kb on - strand, within GFF5591at 211.889 kb on - strand, within GFF5591at 211.889 kb on - strand, within GFF5591at 211.889 kb on - strand, within GFF5591at 211.889 kb on - strand, within GFF5591at 211.889 kb on - strand, within GFF5591at 211.933 kb on + strand, within GFF5591at 211.933 kb on + strand, within GFF5591at 211.945 kb on + strand, within GFF5591at 211.945 kb on + strand, within GFF5591at 211.945 kb on + strand, within GFF5591at 211.945 kb on + strand, within GFF5591at 211.945 kb on + strand, within GFF5591at 211.945 kb on + strand, within GFF5591at 211.945 kb on + strand, within GFF5591at 211.946 kb on - strand, within GFF5591at 211.946 kb on - strand, within GFF5591at 211.946 kb on - strand, within GFF5591at 211.946 kb on - strand, within GFF5591at 211.946 kb on - strand, within GFF5591at 211.951 kb on + strand, within GFF5591at 211.951 kb on + strand, within GFF5591at 211.951 kb on + strand, within GFF5591at 211.964 kb on - strand, within GFF5591at 211.964 kb on - strand, within GFF5591at 212.089 kb on + strand, within GFF5591at 212.089 kb on + strand, within GFF5591at 212.090 kb on - strand, within GFF5591at 212.090 kb on - strand, within GFF5591at 212.090 kb on - strand, within GFF5591at 212.090 kb on - strand, within GFF5591at 212.143 kb on + strand, within GFF5591at 212.143 kb on + strand, within GFF5591at 212.143 kb on + strand, within GFF5591at 212.143 kb on + strand, within GFF5591at 212.143 kb on + strand, within GFF5591at 212.144 kb on - strand, within GFF5591at 212.144 kb on - strand, within GFF5591at 212.144 kb on - strand, within GFF5591at 212.144 kb on - strand, within GFF5591at 212.144 kb on - strand, within GFF5591at 212.144 kb on - strand, within GFF5591at 212.144 kb on - strand, within GFF5591at 212.158 kb on + strand, within GFF5591at 212.159 kb on - strand, within GFF5591at 212.159 kb on - strand, within GFF5591at 212.159 kb on - strand, within GFF5591at 212.159 kb on - strand, within GFF5591at 212.179 kb on + strand, within GFF5591at 212.200 kb on + strand, within GFF5591at 212.200 kb on + strand, within GFF5591at 212.201 kb on - strand, within GFF5591at 212.201 kb on - strand, within GFF5591at 212.201 kb on - strand, within GFF5591at 212.201 kb on - strand, within GFF5591at 212.201 kb on - strand, within GFF5591at 212.207 kb on - strand, within GFF5591at 212.249 kb on - strand, within GFF5591at 212.249 kb on - strand, within GFF5591at 212.249 kb on - strand, within GFF5591at 212.249 kb on - strand, within GFF5591at 212.278 kb on + strand, within GFF5591at 212.278 kb on + strand, within GFF5591at 212.278 kb on + strand, within GFF5591at 212.279 kb on - strand, within GFF5591at 212.279 kb on - strand, within GFF5591at 212.471 kb on + strand, within GFF5591at 212.471 kb on + strand, within GFF5591at 212.471 kb on + strand, within GFF5591at 212.472 kb on - strand, within GFF5591at 212.533 kb on + strand, within GFF5591at 212.534 kb on - strand, within GFF5591at 212.534 kb on - strand, within GFF5591at 212.623 kb on + strandat 212.623 kb on + strandat 212.623 kb on + strandat 212.623 kb on + strandat 212.623 kb on + strandat 212.623 kb on + strandat 212.624 kb on - strandat 212.624 kb on - strandat 212.624 kb on - strandat 212.624 kb on - strandat 212.624 kb on - strandat 212.809 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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210,463 + GFF5590 0.45 -0.1
210,464 - GFF5590 0.46 +1.8
210,544 + GFF5590 0.55 +0.5
210,544 + GFF5590 0.55 -0.2
210,544 + GFF5590 0.55 +0.8
210,544 + GFF5590 0.55 +0.2
210,544 + GFF5590 0.55 -0.3
210,544 + GFF5590 0.55 -0.8
210,544 + GFF5590 0.55 -0.2
210,544 + GFF5590 0.55 +0.6
210,544 + GFF5590 0.55 +0.9
210,544 + GFF5590 0.55 -0.2
210,544 + GFF5590 0.55 +0.3
210,544 + GFF5590 0.55 -0.1
210,544 + GFF5590 0.55 +1.0
210,544 + GFF5590 0.55 +0.1
210,545 - GFF5590 0.55 -0.1
210,545 - GFF5590 0.55 +0.9
210,545 - GFF5590 0.55 -0.4
210,545 - GFF5590 0.55 -0.4
210,545 - GFF5590 0.55 +0.4
210,545 - GFF5590 0.55 -0.1
210,545 - GFF5590 0.55 +0.2
210,545 - GFF5590 0.55 -0.9
210,545 - GFF5590 0.55 +0.4
210,545 - GFF5590 0.55 -0.2
210,545 - GFF5590 0.55 -0.0
210,545 - GFF5590 0.55 +0.3
210,592 + GFF5590 0.60 -0.2
210,592 + GFF5590 0.60 -0.2
210,592 + GFF5590 0.60 -0.2
210,593 - GFF5590 0.60 +0.0
210,593 - GFF5590 0.60 -1.9
210,593 - GFF5590 0.60 -0.9
210,928 + -0.6
210,929 - -1.1
210,929 - -0.6
210,950 - -0.6
211,025 + -0.6
211,025 + -0.5
211,026 - -0.3
211,106 - -0.2
211,492 + GFF5591 0.25 -0.3
211,492 + GFF5591 0.25 +0.5
211,492 + GFF5591 0.25 -0.4
211,492 + GFF5591 0.25 +0.6
211,492 + GFF5591 0.25 +0.3
211,492 + GFF5591 0.25 -0.5
211,492 + GFF5591 0.25 -1.1
211,493 - GFF5591 0.25 -0.2
211,493 - GFF5591 0.25 +0.2
211,493 - GFF5591 0.25 -0.2
211,493 - GFF5591 0.25 -0.6
211,493 - GFF5591 0.25 +1.0
211,493 - GFF5591 0.25 -0.8
211,493 - GFF5591 0.25 +0.8
211,493 - GFF5591 0.25 -1.3
211,498 + GFF5591 0.25 -0.2
211,498 + GFF5591 0.25 -0.1
211,498 + GFF5591 0.25 -0.1
211,498 + GFF5591 0.25 -0.2
211,498 + GFF5591 0.25 +0.8
211,499 - GFF5591 0.25 -0.7
211,499 - GFF5591 0.25 +0.5
211,633 + GFF5591 0.33 -0.2
211,634 - GFF5591 0.34 +1.2
211,634 - GFF5591 0.34 -1.9
211,634 - GFF5591 0.34 -0.1
211,634 - GFF5591 0.34 +0.7
211,634 - GFF5591 0.34 +0.5
211,885 + GFF5591 0.49 -0.9
211,885 + GFF5591 0.49 +0.0
211,885 + GFF5591 0.49 -1.2
211,885 + GFF5591 0.49 -0.0
211,885 + GFF5591 0.49 -1.2
211,885 + GFF5591 0.49 -0.7
211,886 - GFF5591 0.49 -0.1
211,886 - GFF5591 0.49 +1.8
211,888 + GFF5591 0.49 -1.2
211,888 + GFF5591 0.49 -0.5
211,888 + GFF5591 0.49 -0.3
211,888 + GFF5591 0.49 -0.9
211,888 + GFF5591 0.49 -0.2
211,889 - GFF5591 0.49 -0.3
211,889 - GFF5591 0.49 -0.1
211,889 - GFF5591 0.49 +0.2
211,889 - GFF5591 0.49 -0.1
211,889 - GFF5591 0.49 +0.2
211,889 - GFF5591 0.49 -0.1
211,889 - GFF5591 0.49 -0.5
211,933 + GFF5591 0.52 -0.4
211,933 + GFF5591 0.52 -0.4
211,945 + GFF5591 0.53 -0.6
211,945 + GFF5591 0.53 -0.2
211,945 + GFF5591 0.53 -0.3
211,945 + GFF5591 0.53 +0.4
211,945 + GFF5591 0.53 -0.1
211,945 + GFF5591 0.53 -0.5
211,945 + GFF5591 0.53 +0.0
211,946 - GFF5591 0.53 -1.1
211,946 - GFF5591 0.53 -0.6
211,946 - GFF5591 0.53 +0.3
211,946 - GFF5591 0.53 -1.2
211,946 - GFF5591 0.53 +0.1
211,951 + GFF5591 0.53 -0.8
211,951 + GFF5591 0.53 -1.1
211,951 + GFF5591 0.53 -0.6
211,964 - GFF5591 0.54 -0.0
211,964 - GFF5591 0.54 -0.2
212,089 + GFF5591 0.62 -0.4
212,089 + GFF5591 0.62 +0.3
212,090 - GFF5591 0.62 -0.2
212,090 - GFF5591 0.62 -0.1
212,090 - GFF5591 0.62 -0.1
212,090 - GFF5591 0.62 +0.1
212,143 + GFF5591 0.65 -0.1
212,143 + GFF5591 0.65 +0.6
212,143 + GFF5591 0.65 +0.5
212,143 + GFF5591 0.65 -0.2
212,143 + GFF5591 0.65 -0.9
212,144 - GFF5591 0.65 -1.2
212,144 - GFF5591 0.65 -0.6
212,144 - GFF5591 0.65 +0.7
212,144 - GFF5591 0.65 -0.9
212,144 - GFF5591 0.65 +0.1
212,144 - GFF5591 0.65 -0.1
212,144 - GFF5591 0.65 -2.8
212,158 + GFF5591 0.66 -0.7
212,159 - GFF5591 0.66 -2.2
212,159 - GFF5591 0.66 -1.1
212,159 - GFF5591 0.66 -0.6
212,159 - GFF5591 0.66 +0.0
212,179 + GFF5591 0.67 -0.7
212,200 + GFF5591 0.68 -0.7
212,200 + GFF5591 0.68 -0.5
212,201 - GFF5591 0.68 -0.3
212,201 - GFF5591 0.68 -0.4
212,201 - GFF5591 0.68 -0.1
212,201 - GFF5591 0.68 -0.8
212,201 - GFF5591 0.68 -1.2
212,207 - GFF5591 0.69 -0.8
212,249 - GFF5591 0.71 +0.4
212,249 - GFF5591 0.71 -0.2
212,249 - GFF5591 0.71 +0.1
212,249 - GFF5591 0.71 +0.0
212,278 + GFF5591 0.73 +0.0
212,278 + GFF5591 0.73 -0.0
212,278 + GFF5591 0.73 -1.1
212,279 - GFF5591 0.73 -0.3
212,279 - GFF5591 0.73 +0.1
212,471 + GFF5591 0.85 +0.3
212,471 + GFF5591 0.85 +0.3
212,471 + GFF5591 0.85 +0.3
212,472 - GFF5591 0.85 -0.1
212,533 + GFF5591 0.89 +0.2
212,534 - GFF5591 0.89 -0.3
212,534 - GFF5591 0.89 -0.8
212,623 + +0.3
212,623 + -1.1
212,623 + -1.5
212,623 + +0.1
212,623 + -0.0
212,623 + -0.2
212,624 - -0.9
212,624 - +0.4
212,624 - -0.8
212,624 - -0.2
212,624 - +0.0
212,809 - -0.2

Or see this region's nucleotide sequence