Strain Fitness in Variovorax sp. SCN45 around GFF5584

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5583 and GFF5584 are separated by 12 nucleotidesGFF5584 and GFF5585 are separated by 129 nucleotidesGFF5585 and GFF5586 are separated by 23 nucleotides GFF5583 - Transcriptional regulator PA0181, LysR family, at 204,295 to 205,245 GFF5583 GFF5584 - Cyclic-di-GMP-binding biofilm dispersal mediator protein, at 205,258 to 206,142 GFF5584 GFF5585 - Transcriptional regulator, MarR family, at 206,272 to 206,694 GFF5585 GFF5586 - Acetoin dehydrogenase E1 component beta-subunit (EC 2.3.1.190), at 206,718 to 207,686 GFF5586 Position (kb) 205 206 207Strain fitness (log2 ratio) -2 -1 0 1 2 3at 204.398 kb on + strand, within GFF5583at 204.398 kb on + strand, within GFF5583at 204.399 kb on - strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.428 kb on + strand, within GFF5583at 204.429 kb on - strand, within GFF5583at 204.429 kb on - strand, within GFF5583at 204.429 kb on - strand, within GFF5583at 204.686 kb on - strand, within GFF5583at 204.734 kb on + strand, within GFF5583at 204.734 kb on + strand, within GFF5583at 204.734 kb on + strand, within GFF5583at 204.735 kb on - strand, within GFF5583at 204.735 kb on - strand, within GFF5583at 204.735 kb on - strand, within GFF5583at 204.735 kb on - strand, within GFF5583at 205.266 kb on - strandat 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 206.071 kb on + strandat 206.071 kb on + strandat 206.071 kb on + strandat 206.072 kb on - strandat 206.072 kb on - strandat 206.072 kb on - strandat 206.308 kb on + strandat 206.309 kb on - strandat 206.426 kb on + strand, within GFF5585at 206.427 kb on - strand, within GFF5585at 206.427 kb on - strand, within GFF5585at 206.427 kb on - strand, within GFF5585at 206.427 kb on - strand, within GFF5585at 206.575 kb on + strand, within GFF5585at 206.575 kb on + strand, within GFF5585at 206.576 kb on - strand, within GFF5585at 206.794 kb on + strandat 206.794 kb on + strandat 206.794 kb on + strandat 206.795 kb on - strandat 206.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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204,398 + GFF5583 0.11 +0.0
204,398 + GFF5583 0.11 -0.5
204,399 - GFF5583 0.11 +0.2
204,401 + GFF5583 0.11 +0.7
204,401 + GFF5583 0.11 -0.4
204,401 + GFF5583 0.11 -0.8
204,401 + GFF5583 0.11 +0.0
204,401 + GFF5583 0.11 +0.3
204,401 + GFF5583 0.11 -0.5
204,401 + GFF5583 0.11 -0.1
204,401 + GFF5583 0.11 -0.2
204,401 + GFF5583 0.11 +0.6
204,401 + GFF5583 0.11 +0.0
204,401 + GFF5583 0.11 -0.8
204,401 + GFF5583 0.11 -0.7
204,401 + GFF5583 0.11 -0.2
204,402 - GFF5583 0.11 +0.1
204,402 - GFF5583 0.11 -0.2
204,402 - GFF5583 0.11 -0.5
204,402 - GFF5583 0.11 -0.3
204,402 - GFF5583 0.11 -2.2
204,402 - GFF5583 0.11 +2.8
204,402 - GFF5583 0.11 -0.1
204,402 - GFF5583 0.11 -0.2
204,402 - GFF5583 0.11 +0.8
204,402 - GFF5583 0.11 -1.2
204,402 - GFF5583 0.11 -0.6
204,428 + GFF5583 0.14 +0.5
204,429 - GFF5583 0.14 -0.5
204,429 - GFF5583 0.14 -0.3
204,429 - GFF5583 0.14 +0.1
204,686 - GFF5583 0.41 -0.4
204,734 + GFF5583 0.46 -0.1
204,734 + GFF5583 0.46 -1.9
204,734 + GFF5583 0.46 -1.1
204,735 - GFF5583 0.46 -0.1
204,735 - GFF5583 0.46 -1.0
204,735 - GFF5583 0.46 -0.6
204,735 - GFF5583 0.46 -0.2
205,266 - +0.1
205,507 + GFF5584 0.28 -0.8
205,507 + GFF5584 0.28 -0.3
205,507 + GFF5584 0.28 +0.0
205,507 + GFF5584 0.28 +0.4
205,507 + GFF5584 0.28 -0.6
205,507 + GFF5584 0.28 -0.5
205,507 + GFF5584 0.28 -0.4
205,507 + GFF5584 0.28 +0.7
205,507 + GFF5584 0.28 +0.3
205,508 - GFF5584 0.28 -0.4
205,508 - GFF5584 0.28 +0.3
205,508 - GFF5584 0.28 +0.4
205,508 - GFF5584 0.28 +1.8
205,508 - GFF5584 0.28 -1.1
205,508 - GFF5584 0.28 -0.3
205,508 - GFF5584 0.28 -0.4
205,508 - GFF5584 0.28 +0.6
205,508 - GFF5584 0.28 +0.1
205,508 - GFF5584 0.28 -0.5
205,508 - GFF5584 0.28 +0.0
205,508 - GFF5584 0.28 -0.0
205,508 - GFF5584 0.28 -1.2
205,864 + GFF5584 0.68 -0.7
205,864 + GFF5584 0.68 +0.3
205,864 + GFF5584 0.68 -0.7
205,864 + GFF5584 0.68 +1.1
205,864 + GFF5584 0.68 -1.2
205,864 + GFF5584 0.68 +0.1
205,864 + GFF5584 0.68 +0.2
205,864 + GFF5584 0.68 -0.1
205,864 + GFF5584 0.68 -0.1
205,864 + GFF5584 0.68 -0.0
205,864 + GFF5584 0.68 -1.6
205,865 - GFF5584 0.69 -1.6
205,865 - GFF5584 0.69 -0.6
205,865 - GFF5584 0.69 +0.4
205,865 - GFF5584 0.69 -0.3
205,865 - GFF5584 0.69 +0.8
205,865 - GFF5584 0.69 -0.7
205,865 - GFF5584 0.69 -0.3
205,865 - GFF5584 0.69 +0.5
205,865 - GFF5584 0.69 +0.7
205,865 - GFF5584 0.69 +0.7
205,865 - GFF5584 0.69 -0.2
205,865 - GFF5584 0.69 -0.2
206,071 + -0.9
206,071 + -0.6
206,071 + -0.6
206,072 - +1.3
206,072 - +0.2
206,072 - +1.0
206,308 + -0.3
206,309 - -1.2
206,426 + GFF5585 0.36 +0.0
206,427 - GFF5585 0.37 -0.2
206,427 - GFF5585 0.37 +0.2
206,427 - GFF5585 0.37 -0.2
206,427 - GFF5585 0.37 +1.2
206,575 + GFF5585 0.72 +0.5
206,575 + GFF5585 0.72 -0.6
206,576 - GFF5585 0.72 +0.8
206,794 + -0.8
206,794 + +0.2
206,794 + +0.2
206,795 - -0.1
206,795 - -0.1

Or see this region's nucleotide sequence