Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5579 and GFF5580 are separated by 124 nucleotides GFF5580 and GFF5581 are separated by 11 nucleotides GFF5581 and GFF5582 are separated by 124 nucleotides
GFF5579 - probable bifunctional hydroxylase/oxidoreductase, at 198,960 to 201,338
GFF5579
GFF5580 - Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), at 201,463 to 202,743
GFF5580
GFF5581 - SSU ribosomal protein S5p (S2e), at 202,755 to 203,078
GFF5581
GFF5582 - BUG/TctC family periplasmic protein, at 203,203 to 204,231
GFF5582
Position (kb) 201
202
203 Strain fitness (log2 ratio) -2
-1
0
1
2 at 200.581 kb on + strand, within GFF5579 at 200.581 kb on + strand, within GFF5579 at 200.581 kb on + strand, within GFF5579 at 200.581 kb on + strand, within GFF5579 at 200.581 kb on + strand, within GFF5579 at 200.582 kb on - strand, within GFF5579 at 200.707 kb on + strand, within GFF5579 at 200.707 kb on + strand, within GFF5579 at 200.707 kb on + strand, within GFF5579 at 200.839 kb on + strand, within GFF5579 at 200.896 kb on + strand, within GFF5579 at 200.896 kb on + strand, within GFF5579 at 200.897 kb on - strand, within GFF5579 at 200.897 kb on - strand, within GFF5579 at 201.245 kb on - strand at 201.245 kb on - strand at 201.389 kb on + strand at 201.389 kb on + strand at 201.390 kb on - strand at 201.390 kb on - strand at 201.390 kb on - strand at 201.390 kb on - strand at 201.652 kb on + strand, within GFF5580 at 201.652 kb on + strand, within GFF5580 at 201.652 kb on + strand, within GFF5580 at 201.652 kb on + strand, within GFF5580 at 201.652 kb on + strand, within GFF5580 at 201.652 kb on + strand, within GFF5580 at 201.652 kb on + strand, within GFF5580 at 201.652 kb on + strand, within GFF5580 at 201.652 kb on + strand, within GFF5580 at 201.652 kb on + strand, within GFF5580 at 201.653 kb on - strand, within GFF5580 at 201.653 kb on - strand, within GFF5580 at 201.653 kb on - strand, within GFF5580 at 201.653 kb on - strand, within GFF5580 at 201.653 kb on - strand, within GFF5580 at 201.674 kb on + strand, within GFF5580 at 201.674 kb on + strand, within GFF5580 at 201.674 kb on + strand, within GFF5580 at 201.674 kb on + strand, within GFF5580 at 201.674 kb on + strand, within GFF5580 at 201.674 kb on + strand, within GFF5580 at 201.674 kb on + strand, within GFF5580 at 201.675 kb on - strand, within GFF5580 at 201.675 kb on - strand, within GFF5580 at 201.675 kb on - strand, within GFF5580 at 201.675 kb on - strand, within GFF5580 at 201.832 kb on + strand, within GFF5580 at 201.832 kb on + strand, within GFF5580 at 201.832 kb on + strand, within GFF5580 at 201.853 kb on + strand, within GFF5580 at 201.854 kb on - strand, within GFF5580 at 201.854 kb on - strand, within GFF5580 at 201.861 kb on - strand, within GFF5580 at 201.861 kb on - strand, within GFF5580 at 201.883 kb on + strand, within GFF5580 at 201.883 kb on + strand, within GFF5580 at 201.883 kb on + strand, within GFF5580 at 201.883 kb on + strand, within GFF5580 at 201.883 kb on + strand, within GFF5580 at 201.884 kb on - strand, within GFF5580 at 201.884 kb on - strand, within GFF5580 at 201.884 kb on - strand, within GFF5580 at 201.884 kb on - strand, within GFF5580 at 201.895 kb on + strand, within GFF5580 at 201.895 kb on + strand, within GFF5580 at 201.896 kb on - strand, within GFF5580 at 201.896 kb on - strand, within GFF5580 at 201.988 kb on + strand, within GFF5580 at 201.989 kb on - strand, within GFF5580 at 201.989 kb on - strand, within GFF5580 at 202.043 kb on - strand, within GFF5580 at 202.043 kb on - strand, within GFF5580 at 202.154 kb on - strand, within GFF5580 at 202.240 kb on + strand, within GFF5580 at 202.240 kb on + strand, within GFF5580 at 202.241 kb on - strand, within GFF5580 at 202.241 kb on - strand, within GFF5580 at 202.241 kb on - strand, within GFF5580 at 202.241 kb on - strand, within GFF5580 at 202.241 kb on - strand, within GFF5580 at 202.318 kb on + strand, within GFF5580 at 202.318 kb on + strand, within GFF5580 at 202.319 kb on - strand, within GFF5580 at 202.360 kb on + strand, within GFF5580 at 202.360 kb on + strand, within GFF5580 at 202.360 kb on + strand, within GFF5580 at 202.360 kb on + strand, within GFF5580 at 202.360 kb on + strand, within GFF5580 at 202.360 kb on + strand, within GFF5580 at 202.360 kb on + strand, within GFF5580 at 202.360 kb on + strand, within GFF5580 at 202.360 kb on + strand, within GFF5580 at 202.360 kb on + strand, within GFF5580 at 202.360 kb on + strand, within GFF5580 at 202.360 kb on + strand, within GFF5580 at 202.360 kb on + strand, within GFF5580 at 202.361 kb on - strand, within GFF5580 at 202.361 kb on - strand, within GFF5580 at 202.361 kb on - strand, within GFF5580 at 202.361 kb on - strand, within GFF5580 at 202.361 kb on - strand, within GFF5580 at 202.361 kb on - strand, within GFF5580 at 202.361 kb on - strand, within GFF5580 at 202.361 kb on - strand, within GFF5580 at 202.361 kb on - strand, within GFF5580 at 202.462 kb on + strand, within GFF5580 at 202.462 kb on + strand, within GFF5580 at 202.462 kb on + strand, within GFF5580 at 202.462 kb on + strand, within GFF5580 at 202.462 kb on + strand, within GFF5580 at 202.463 kb on + strand, within GFF5580 at 202.463 kb on - strand, within GFF5580 at 202.463 kb on - strand, within GFF5580 at 202.585 kb on + strand, within GFF5580 at 202.594 kb on + strand, within GFF5580 at 202.595 kb on - strand, within GFF5580 at 202.595 kb on - strand, within GFF5580 at 202.711 kb on + strand at 202.711 kb on + strand at 202.712 kb on - strand at 202.712 kb on - strand at 202.729 kb on + strand at 202.729 kb on + strand at 202.729 kb on + strand at 202.729 kb on + strand at 202.729 kb on + strand at 202.729 kb on + strand at 202.729 kb on + strand at 202.729 kb on + strand at 202.729 kb on + strand at 202.729 kb on + strand at 202.729 kb on + strand at 202.729 kb on + strand at 202.729 kb on + strand at 202.730 kb on - strand at 202.730 kb on - strand at 202.730 kb on - strand at 202.730 kb on - strand at 202.730 kb on - strand at 202.730 kb on - strand at 202.730 kb on - strand at 202.730 kb on - strand at 202.730 kb on - strand at 202.730 kb on - strand at 202.730 kb on - strand at 202.730 kb on - strand at 202.735 kb on + strand at 202.735 kb on + strand at 202.735 kb on + strand at 202.735 kb on + strand at 202.735 kb on + strand at 202.735 kb on + strand at 202.735 kb on + strand at 202.735 kb on + strand at 202.735 kb on + strand at 202.735 kb on + strand at 202.735 kb on + strand at 202.735 kb on + strand at 202.735 kb on + strand at 202.735 kb on + strand at 202.736 kb on - strand at 202.736 kb on - strand at 202.736 kb on - strand at 202.736 kb on - strand at 202.736 kb on - strand at 202.736 kb on - strand at 202.736 kb on - strand at 202.736 kb on - strand at 202.741 kb on + strand at 202.741 kb on + strand at 202.741 kb on + strand at 202.741 kb on + strand at 202.741 kb on + strand at 202.741 kb on + strand at 202.741 kb on + strand at 202.741 kb on + strand at 202.742 kb on - strand at 202.742 kb on - strand at 202.742 kb on - strand at 202.742 kb on - strand at 202.742 kb on - strand at 202.742 kb on - strand at 202.742 kb on - strand at 202.742 kb on - strand at 202.761 kb on + strand at 202.761 kb on + strand at 202.762 kb on - strand at 202.950 kb on + strand, within GFF5581 at 202.950 kb on + strand, within GFF5581 at 202.951 kb on - strand, within GFF5581 at 202.993 kb on + strand, within GFF5581 at 202.993 kb on + strand, within GFF5581 at 202.993 kb on + strand, within GFF5581 at 202.993 kb on + strand, within GFF5581 at 202.993 kb on + strand, within GFF5581 at 202.993 kb on + strand, within GFF5581 at 202.993 kb on + strand, within GFF5581 at 202.993 kb on + strand, within GFF5581 at 202.994 kb on - strand, within GFF5581 at 202.994 kb on - strand, within GFF5581 at 202.994 kb on - strand, within GFF5581 at 202.994 kb on - strand, within GFF5581 at 202.994 kb on - strand, within GFF5581 at 202.994 kb on - strand, within GFF5581 at 202.994 kb on - strand, within GFF5581 at 202.994 kb on - strand, within GFF5581 at 202.994 kb on - strand, within GFF5581 at 202.994 kb on - strand, within GFF5581 at 202.994 kb on - strand, within GFF5581 at 202.994 kb on - strand, within GFF5581 at 202.994 kb on - strand, within GFF5581 at 203.205 kb on - strand at 203.205 kb on - strand at 203.633 kb on + strand, within GFF5582 at 203.633 kb on + strand, within GFF5582 at 203.633 kb on + strand, within GFF5582 at 203.634 kb on - strand, within GFF5582 at 203.634 kb on - strand, within GFF5582 at 203.634 kb on - strand, within GFF5582 at 203.634 kb on - strand, within GFF5582 at 203.634 kb on - strand, within GFF5582 at 203.634 kb on - strand, within GFF5582 at 203.634 kb on - strand, within GFF5582 at 203.634 kb on - strand, within GFF5582 at 203.636 kb on - strand, within GFF5582
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 200,581 + GFF5579 0.68 -0.4 200,581 + GFF5579 0.68 -0.7 200,581 + GFF5579 0.68 +0.2 200,581 + GFF5579 0.68 +0.2 200,581 + GFF5579 0.68 +0.1 200,582 - GFF5579 0.68 +0.8 200,707 + GFF5579 0.73 +0.0 200,707 + GFF5579 0.73 -0.3 200,707 + GFF5579 0.73 -1.3 200,839 + GFF5579 0.79 +0.1 200,896 + GFF5579 0.81 +0.1 200,896 + GFF5579 0.81 -0.5 200,897 - GFF5579 0.81 -0.5 200,897 - GFF5579 0.81 -1.1 201,245 - +0.2 201,245 - +0.0 201,389 + -1.1 201,389 + -0.2 201,390 - -0.6 201,390 - +0.3 201,390 - -0.5 201,390 - -0.2 201,652 + GFF5580 0.15 -0.9 201,652 + GFF5580 0.15 +0.5 201,652 + GFF5580 0.15 -0.4 201,652 + GFF5580 0.15 -0.0 201,652 + GFF5580 0.15 -0.7 201,652 + GFF5580 0.15 +0.2 201,652 + GFF5580 0.15 +0.2 201,652 + GFF5580 0.15 -0.4 201,652 + GFF5580 0.15 -0.8 201,652 + GFF5580 0.15 -0.5 201,653 - GFF5580 0.15 +0.1 201,653 - GFF5580 0.15 -0.3 201,653 - GFF5580 0.15 -0.2 201,653 - GFF5580 0.15 -0.4 201,653 - GFF5580 0.15 -1.4 201,674 + GFF5580 0.16 -0.2 201,674 + GFF5580 0.16 -0.8 201,674 + GFF5580 0.16 -0.4 201,674 + GFF5580 0.16 +0.1 201,674 + GFF5580 0.16 +0.4 201,674 + GFF5580 0.16 -0.9 201,674 + GFF5580 0.16 -0.1 201,675 - GFF5580 0.17 -0.5 201,675 - GFF5580 0.17 -0.3 201,675 - GFF5580 0.17 +0.8 201,675 - GFF5580 0.17 -1.2 201,832 + GFF5580 0.29 -1.1 201,832 + GFF5580 0.29 +0.1 201,832 + GFF5580 0.29 -1.3 201,853 + GFF5580 0.30 -0.5 201,854 - GFF5580 0.31 -0.1 201,854 - GFF5580 0.31 -0.5 201,861 - GFF5580 0.31 -0.6 201,861 - GFF5580 0.31 -1.1 201,883 + GFF5580 0.33 +0.4 201,883 + GFF5580 0.33 -0.1 201,883 + GFF5580 0.33 -0.9 201,883 + GFF5580 0.33 +0.3 201,883 + GFF5580 0.33 -0.8 201,884 - GFF5580 0.33 +0.4 201,884 - GFF5580 0.33 -0.4 201,884 - GFF5580 0.33 -0.7 201,884 - GFF5580 0.33 -1.1 201,895 + GFF5580 0.34 -0.4 201,895 + GFF5580 0.34 -0.4 201,896 - GFF5580 0.34 +0.8 201,896 - GFF5580 0.34 +0.0 201,988 + GFF5580 0.41 +1.8 201,989 - GFF5580 0.41 -1.4 201,989 - GFF5580 0.41 -1.4 202,043 - GFF5580 0.45 -0.3 202,043 - GFF5580 0.45 -1.5 202,154 - GFF5580 0.54 +1.2 202,240 + GFF5580 0.61 +1.0 202,240 + GFF5580 0.61 +0.1 202,241 - GFF5580 0.61 -0.8 202,241 - GFF5580 0.61 +0.3 202,241 - GFF5580 0.61 +0.8 202,241 - GFF5580 0.61 -0.2 202,241 - GFF5580 0.61 -0.5 202,318 + GFF5580 0.67 -1.1 202,318 + GFF5580 0.67 -0.4 202,319 - GFF5580 0.67 -0.4 202,360 + GFF5580 0.70 -1.2 202,360 + GFF5580 0.70 -0.7 202,360 + GFF5580 0.70 -0.4 202,360 + GFF5580 0.70 +0.2 202,360 + GFF5580 0.70 -0.1 202,360 + GFF5580 0.70 -0.3 202,360 + GFF5580 0.70 +0.6 202,360 + GFF5580 0.70 -0.0 202,360 + GFF5580 0.70 -1.0 202,360 + GFF5580 0.70 -1.4 202,360 + GFF5580 0.70 -0.4 202,360 + GFF5580 0.70 -0.6 202,360 + GFF5580 0.70 -0.2 202,361 - GFF5580 0.70 -0.8 202,361 - GFF5580 0.70 -0.6 202,361 - GFF5580 0.70 +1.2 202,361 - GFF5580 0.70 -1.1 202,361 - GFF5580 0.70 -0.6 202,361 - GFF5580 0.70 +0.8 202,361 - GFF5580 0.70 -1.5 202,361 - GFF5580 0.70 +0.1 202,361 - GFF5580 0.70 -0.3 202,462 + GFF5580 0.78 +0.6 202,462 + GFF5580 0.78 +0.0 202,462 + GFF5580 0.78 +0.2 202,462 + GFF5580 0.78 -1.6 202,462 + GFF5580 0.78 -1.1 202,463 + GFF5580 0.78 +1.0 202,463 - GFF5580 0.78 -0.8 202,463 - GFF5580 0.78 -1.3 202,585 + GFF5580 0.88 -0.8 202,594 + GFF5580 0.88 -1.4 202,595 - GFF5580 0.88 -1.4 202,595 - GFF5580 0.88 -1.0 202,711 + -0.1 202,711 + -0.5 202,712 - -0.9 202,712 - -0.9 202,729 + -0.4 202,729 + -0.5 202,729 + +0.9 202,729 + +0.5 202,729 + -0.5 202,729 + -0.6 202,729 + -1.5 202,729 + +0.0 202,729 + -0.8 202,729 + -0.2 202,729 + -0.2 202,729 + -0.4 202,729 + -2.5 202,730 - -1.0 202,730 - -0.8 202,730 - +0.8 202,730 - -0.4 202,730 - +0.0 202,730 - +2.1 202,730 - +0.8 202,730 - -1.7 202,730 - -0.3 202,730 - -0.2 202,730 - -0.4 202,730 - +0.2 202,735 + -0.7 202,735 + +0.9 202,735 + -1.5 202,735 + -0.5 202,735 + -0.6 202,735 + -0.2 202,735 + -0.4 202,735 + +1.1 202,735 + -0.3 202,735 + -0.5 202,735 + +0.2 202,735 + +1.5 202,735 + -0.6 202,735 + -0.6 202,736 - -0.3 202,736 - +0.3 202,736 - -0.2 202,736 - -1.6 202,736 - -1.5 202,736 - -0.6 202,736 - -0.8 202,736 - +0.8 202,741 + -0.1 202,741 + +0.2 202,741 + -0.1 202,741 + +0.6 202,741 + +0.4 202,741 + -0.9 202,741 + -0.4 202,741 + -0.1 202,742 - -1.1 202,742 - -0.8 202,742 - -0.1 202,742 - +0.2 202,742 - +0.7 202,742 - -1.3 202,742 - +0.8 202,742 - -0.6 202,761 + -0.6 202,761 + -0.3 202,762 - +0.8 202,950 + GFF5581 0.60 -0.3 202,950 + GFF5581 0.60 +0.8 202,951 - GFF5581 0.60 -0.2 202,993 + GFF5581 0.73 -0.3 202,993 + GFF5581 0.73 -0.8 202,993 + GFF5581 0.73 -0.2 202,993 + GFF5581 0.73 +0.3 202,993 + GFF5581 0.73 +0.4 202,993 + GFF5581 0.73 +0.2 202,993 + GFF5581 0.73 -0.2 202,993 + GFF5581 0.73 -0.9 202,994 - GFF5581 0.74 +0.1 202,994 - GFF5581 0.74 +0.0 202,994 - GFF5581 0.74 +0.1 202,994 - GFF5581 0.74 +0.1 202,994 - GFF5581 0.74 +0.8 202,994 - GFF5581 0.74 -0.6 202,994 - GFF5581 0.74 -0.6 202,994 - GFF5581 0.74 -1.2 202,994 - GFF5581 0.74 -0.6 202,994 - GFF5581 0.74 +0.4 202,994 - GFF5581 0.74 -1.6 202,994 - GFF5581 0.74 +1.8 202,994 - GFF5581 0.74 +1.5 203,205 - +0.9 203,205 - -0.8 203,633 + GFF5582 0.42 -0.2 203,633 + GFF5582 0.42 +0.6 203,633 + GFF5582 0.42 -1.0 203,634 - GFF5582 0.42 -0.2 203,634 - GFF5582 0.42 -0.8 203,634 - GFF5582 0.42 -0.1 203,634 - GFF5582 0.42 -0.8 203,634 - GFF5582 0.42 +0.3 203,634 - GFF5582 0.42 -0.3 203,634 - GFF5582 0.42 -1.2 203,634 - GFF5582 0.42 -0.6 203,636 - GFF5582 0.42 -0.7
Or see this region's nucleotide sequence