Strain Fitness in Variovorax sp. SCN45 around GFF5554

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5552 and GFF5553 are separated by 2 nucleotidesGFF5553 and GFF5554 are separated by 12 nucleotidesGFF5554 and GFF5555 are separated by 215 nucleotidesGFF5555 and GFF5556 are separated by 13 nucleotidesGFF5556 and GFF5557 are separated by 11 nucleotides GFF5552 - MaoC domain protein dehydratase, at 180,848 to 181,333 GFF5552 GFF5553 - Pyrroline-5-carboxylate reductase (EC 1.5.1.2), at 181,336 to 182,193 GFF5553 GFF5554 - FIG00347521: hypothetical protein, at 182,206 to 183,366 GFF5554 GFF5555 - LSU ribosomal protein L14p (L23e), at 183,582 to 183,950 GFF5555 GFF5556 - LSU ribosomal protein L24p (L26e), at 183,964 to 184,296 GFF5556 GFF5557 - LSU ribosomal protein L5p (L11e), at 184,308 to 184,847 GFF5557 Position (kb) 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 182.207 kb on + strandat 182.208 kb on - strandat 182.453 kb on + strand, within GFF5554at 182.453 kb on + strand, within GFF5554at 182.453 kb on + strand, within GFF5554at 182.453 kb on + strand, within GFF5554at 182.454 kb on - strand, within GFF5554at 182.485 kb on - strand, within GFF5554at 182.486 kb on + strand, within GFF5554at 182.486 kb on + strand, within GFF5554at 182.487 kb on - strand, within GFF5554at 182.487 kb on - strand, within GFF5554at 182.487 kb on - strand, within GFF5554at 182.487 kb on - strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.555 kb on + strand, within GFF5554at 182.556 kb on - strand, within GFF5554at 182.556 kb on - strand, within GFF5554at 182.556 kb on - strand, within GFF5554at 182.556 kb on - strand, within GFF5554at 182.556 kb on - strand, within GFF5554at 182.556 kb on - strand, within GFF5554at 182.556 kb on - strand, within GFF5554at 182.600 kb on + strand, within GFF5554at 182.600 kb on + strand, within GFF5554at 182.600 kb on + strand, within GFF5554at 182.600 kb on + strand, within GFF5554at 182.600 kb on + strand, within GFF5554at 182.600 kb on + strand, within GFF5554at 182.600 kb on + strand, within GFF5554at 182.601 kb on - strand, within GFF5554at 182.601 kb on - strand, within GFF5554at 182.601 kb on - strand, within GFF5554at 182.601 kb on - strand, within GFF5554at 182.836 kb on + strand, within GFF5554at 182.864 kb on + strand, within GFF5554at 182.864 kb on + strand, within GFF5554at 182.864 kb on + strand, within GFF5554at 182.864 kb on + strand, within GFF5554at 182.865 kb on - strand, within GFF5554at 182.865 kb on - strand, within GFF5554at 182.865 kb on - strand, within GFF5554at 182.865 kb on - strand, within GFF5554at 183.025 kb on + strand, within GFF5554at 183.025 kb on + strand, within GFF5554at 183.025 kb on + strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.080 kb on + strand, within GFF5554at 183.080 kb on + strand, within GFF5554at 183.080 kb on + strand, within GFF5554at 183.080 kb on - strand, within GFF5554at 183.081 kb on - strand, within GFF5554at 183.081 kb on - strand, within GFF5554at 183.081 kb on - strand, within GFF5554at 183.084 kb on - strand, within GFF5554at 183.084 kb on - strand, within GFF5554at 183.084 kb on - strand, within GFF5554at 183.084 kb on - strand, within GFF5554at 183.128 kb on + strand, within GFF5554at 183.129 kb on - strand, within GFF5554at 183.129 kb on - strand, within GFF5554at 183.149 kb on + strand, within GFF5554at 183.150 kb on - strand, within GFF5554at 183.150 kb on - strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.189 kb on + strand, within GFF5554at 183.189 kb on + strand, within GFF5554at 183.189 kb on + strand, within GFF5554at 183.189 kb on + strand, within GFF5554at 183.189 kb on + strand, within GFF5554at 183.189 kb on + strand, within GFF5554at 183.190 kb on - strand, within GFF5554at 183.190 kb on - strand, within GFF5554at 183.190 kb on - strand, within GFF5554at 183.190 kb on - strand, within GFF5554at 183.190 kb on - strand, within GFF5554at 183.378 kb on + strandat 183.379 kb on - strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.400 kb on - strandat 183.400 kb on - strandat 183.400 kb on - strandat 183.403 kb on - strandat 183.403 kb on - strandat 183.403 kb on - strandat 183.403 kb on - strandat 183.560 kb on + strandat 183.560 kb on + strandat 183.573 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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182,207 + +0.0
182,208 - +0.3
182,453 + GFF5554 0.21 -0.2
182,453 + GFF5554 0.21 +0.3
182,453 + GFF5554 0.21 +0.1
182,453 + GFF5554 0.21 -0.8
182,454 - GFF5554 0.21 +0.2
182,485 - GFF5554 0.24 +0.8
182,486 + GFF5554 0.24 -0.1
182,486 + GFF5554 0.24 -0.1
182,487 - GFF5554 0.24 -1.1
182,487 - GFF5554 0.24 -0.1
182,487 - GFF5554 0.24 -0.3
182,487 - GFF5554 0.24 +0.9
182,555 + GFF5554 0.30 -0.7
182,555 + GFF5554 0.30 -0.6
182,555 + GFF5554 0.30 -0.6
182,555 + GFF5554 0.30 -1.2
182,555 + GFF5554 0.30 -0.3
182,555 + GFF5554 0.30 -0.6
182,555 + GFF5554 0.30 +0.1
182,555 + GFF5554 0.30 -0.9
182,555 + GFF5554 0.30 +1.8
182,555 + GFF5554 0.30 -0.3
182,555 + GFF5554 0.30 -0.4
182,555 + GFF5554 0.30 +0.2
182,555 + GFF5554 0.30 -0.8
182,555 + GFF5554 0.30 +0.6
182,555 + GFF5554 0.30 +0.2
182,555 + GFF5554 0.30 -0.4
182,555 + GFF5554 0.30 -0.5
182,556 - GFF5554 0.30 +0.0
182,556 - GFF5554 0.30 -1.0
182,556 - GFF5554 0.30 -0.2
182,556 - GFF5554 0.30 -1.3
182,556 - GFF5554 0.30 +0.2
182,556 - GFF5554 0.30 -1.6
182,556 - GFF5554 0.30 +1.9
182,600 + GFF5554 0.34 -0.5
182,600 + GFF5554 0.34 -1.1
182,600 + GFF5554 0.34 -0.2
182,600 + GFF5554 0.34 +0.6
182,600 + GFF5554 0.34 -1.4
182,600 + GFF5554 0.34 +0.6
182,600 + GFF5554 0.34 -0.3
182,601 - GFF5554 0.34 -0.3
182,601 - GFF5554 0.34 -1.1
182,601 - GFF5554 0.34 +1.8
182,601 - GFF5554 0.34 -0.0
182,836 + GFF5554 0.54 -0.2
182,864 + GFF5554 0.57 -0.9
182,864 + GFF5554 0.57 -0.4
182,864 + GFF5554 0.57 -0.3
182,864 + GFF5554 0.57 -0.4
182,865 - GFF5554 0.57 +1.8
182,865 - GFF5554 0.57 -0.1
182,865 - GFF5554 0.57 +0.2
182,865 - GFF5554 0.57 -0.1
183,025 + GFF5554 0.71 +1.0
183,025 + GFF5554 0.71 -0.8
183,025 + GFF5554 0.71 +0.2
183,026 - GFF5554 0.71 -1.5
183,026 - GFF5554 0.71 -0.2
183,026 - GFF5554 0.71 -0.2
183,026 - GFF5554 0.71 -0.2
183,026 - GFF5554 0.71 -0.3
183,026 - GFF5554 0.71 +0.4
183,026 - GFF5554 0.71 -0.1
183,026 - GFF5554 0.71 -0.3
183,026 - GFF5554 0.71 -0.1
183,080 + GFF5554 0.75 -0.9
183,080 + GFF5554 0.75 -0.6
183,080 + GFF5554 0.75 -0.7
183,080 - GFF5554 0.75 +0.4
183,081 - GFF5554 0.75 -0.1
183,081 - GFF5554 0.75 +0.3
183,081 - GFF5554 0.75 -0.2
183,084 - GFF5554 0.76 +1.0
183,084 - GFF5554 0.76 -1.1
183,084 - GFF5554 0.76 +0.3
183,084 - GFF5554 0.76 -0.1
183,128 + GFF5554 0.79 -0.3
183,129 - GFF5554 0.80 -0.5
183,129 - GFF5554 0.80 +0.8
183,149 + GFF5554 0.81 -0.1
183,150 - GFF5554 0.81 -0.1
183,150 - GFF5554 0.81 -0.2
183,187 + GFF5554 0.84 +0.9
183,187 + GFF5554 0.84 -0.4
183,187 + GFF5554 0.84 +0.4
183,187 + GFF5554 0.84 +0.9
183,187 + GFF5554 0.84 -0.3
183,187 + GFF5554 0.84 -0.8
183,187 + GFF5554 0.84 -0.2
183,187 + GFF5554 0.84 +1.0
183,187 + GFF5554 0.84 -0.4
183,187 + GFF5554 0.84 -0.6
183,187 + GFF5554 0.84 -0.1
183,187 + GFF5554 0.84 +0.0
183,187 + GFF5554 0.84 -0.5
183,187 + GFF5554 0.84 -1.0
183,187 + GFF5554 0.84 -0.1
183,187 + GFF5554 0.84 +0.2
183,187 + GFF5554 0.84 -0.5
183,187 + GFF5554 0.84 -0.2
183,187 + GFF5554 0.84 -0.4
183,187 + GFF5554 0.84 -0.8
183,188 - GFF5554 0.85 -1.6
183,188 - GFF5554 0.85 -0.6
183,188 - GFF5554 0.85 -0.6
183,188 - GFF5554 0.85 -1.9
183,188 - GFF5554 0.85 -0.7
183,188 - GFF5554 0.85 +0.3
183,188 - GFF5554 0.85 +0.2
183,188 - GFF5554 0.85 -0.9
183,188 - GFF5554 0.85 -1.1
183,188 - GFF5554 0.85 +0.2
183,188 - GFF5554 0.85 +0.0
183,188 - GFF5554 0.85 +1.1
183,188 - GFF5554 0.85 -0.6
183,188 - GFF5554 0.85 -0.6
183,188 - GFF5554 0.85 -0.5
183,188 - GFF5554 0.85 -0.2
183,188 - GFF5554 0.85 -1.7
183,189 + GFF5554 0.85 -0.8
183,189 + GFF5554 0.85 -1.6
183,189 + GFF5554 0.85 -0.6
183,189 + GFF5554 0.85 -0.8
183,189 + GFF5554 0.85 -1.2
183,189 + GFF5554 0.85 -0.1
183,190 - GFF5554 0.85 -1.1
183,190 - GFF5554 0.85 -0.2
183,190 - GFF5554 0.85 -0.3
183,190 - GFF5554 0.85 +0.0
183,190 - GFF5554 0.85 -0.4
183,378 + -0.3
183,379 - -0.4
183,399 + -0.4
183,399 + -0.3
183,399 + -0.8
183,399 + -0.6
183,399 + -0.2
183,399 + +0.3
183,399 + +1.4
183,399 + +0.1
183,399 + -0.4
183,399 + -0.2
183,399 + -0.1
183,400 - -0.6
183,400 - +0.0
183,400 - -0.3
183,403 - -0.1
183,403 - +0.8
183,403 - -0.3
183,403 - -0.3
183,560 + -0.7
183,560 + -1.4
183,573 + -3.2

Or see this region's nucleotide sequence