Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF548 and GFF549 are separated by 15 nucleotides GFF549 and GFF550 are separated by 17 nucleotides
GFF548 - Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2), at 590,130 to 591,110
GFF548
GFF549 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 591,126 to 591,776
GFF549
GFF550 - Cysteinyl-tRNA synthetase (EC 6.1.1.16), at 591,794 to 593,170
GFF550
Position (kb) 591
592 Strain fitness (log2 ratio) -2
-1
0
1
2 at 590.131 kb on + strand at 590.131 kb on + strand at 590.131 kb on + strand at 590.132 kb on - strand at 590.132 kb on - strand at 590.132 kb on - strand at 590.132 kb on - strand at 590.132 kb on - strand at 591.166 kb on + strand at 591.166 kb on + strand at 591.166 kb on + strand at 591.166 kb on + strand at 591.167 kb on - strand at 591.167 kb on - strand at 591.167 kb on - strand at 591.167 kb on - strand at 591.167 kb on - strand at 591.167 kb on - strand at 591.167 kb on - strand at 591.167 kb on - strand at 591.167 kb on - strand at 591.167 kb on - strand at 591.167 kb on - strand at 591.188 kb on - strand at 591.460 kb on + strand, within GFF549 at 591.461 kb on - strand, within GFF549 at 591.461 kb on - strand, within GFF549 at 591.461 kb on - strand, within GFF549 at 591.519 kb on + strand, within GFF549 at 591.519 kb on + strand, within GFF549 at 591.519 kb on + strand, within GFF549 at 591.519 kb on + strand, within GFF549 at 591.519 kb on + strand, within GFF549 at 591.519 kb on + strand, within GFF549 at 591.519 kb on + strand, within GFF549 at 591.519 kb on + strand, within GFF549 at 591.519 kb on + strand, within GFF549 at 591.520 kb on - strand, within GFF549 at 591.520 kb on - strand, within GFF549 at 591.520 kb on - strand, within GFF549 at 591.520 kb on - strand, within GFF549 at 591.730 kb on + strand at 591.730 kb on + strand at 591.731 kb on - strand at 591.731 kb on - strand at 591.731 kb on - strand at 591.740 kb on + strand at 591.740 kb on + strand at 591.740 kb on + strand at 591.741 kb on - strand at 591.741 kb on - strand at 591.741 kb on - strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.750 kb on + strand at 591.750 kb on + strand at 591.750 kb on + strand at 591.750 kb on + strand at 591.751 kb on - strand at 591.751 kb on - strand at 591.751 kb on - strand at 591.751 kb on - strand at 591.751 kb on - strand at 591.751 kb on - strand at 591.788 kb on + strand at 591.789 kb on - strand at 591.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 590,131 + -1.1 590,131 + +0.0 590,131 + +0.1 590,132 - -1.2 590,132 - -0.3 590,132 - -1.1 590,132 - -0.2 590,132 - -0.6 591,166 + +0.5 591,166 + +1.5 591,166 + -1.7 591,166 + -0.1 591,167 - -0.5 591,167 - -0.0 591,167 - -1.0 591,167 - -2.6 591,167 - +1.8 591,167 - -1.5 591,167 - +0.1 591,167 - +0.3 591,167 - -0.6 591,167 - -0.3 591,167 - -2.2 591,188 - +0.5 591,460 + GFF549 0.51 -1.5 591,461 - GFF549 0.51 +0.4 591,461 - GFF549 0.51 -1.2 591,461 - GFF549 0.51 +1.3 591,519 + GFF549 0.60 -0.0 591,519 + GFF549 0.60 -0.7 591,519 + GFF549 0.60 -0.2 591,519 + GFF549 0.60 -1.0 591,519 + GFF549 0.60 +1.5 591,519 + GFF549 0.60 -0.5 591,519 + GFF549 0.60 -1.0 591,519 + GFF549 0.60 -0.7 591,519 + GFF549 0.60 -1.7 591,520 - GFF549 0.61 -1.0 591,520 - GFF549 0.61 +0.1 591,520 - GFF549 0.61 -0.5 591,520 - GFF549 0.61 -1.0 591,730 + -1.7 591,730 + -1.2 591,731 - -0.1 591,731 - -0.6 591,731 - -0.2 591,740 + -0.4 591,740 + -1.3 591,740 + -0.7 591,741 - +0.9 591,741 - -0.0 591,741 - -0.1 591,742 + -1.9 591,742 + +1.3 591,742 + -2.2 591,742 + -0.3 591,742 + -2.4 591,742 + +0.1 591,742 + -0.6 591,742 + -0.3 591,742 + -2.0 591,742 + -0.0 591,742 + +0.5 591,742 + -1.2 591,742 + -0.6 591,742 + -1.5 591,742 + -0.4 591,742 + -0.6 591,742 + -1.5 591,742 + -0.5 591,743 - -1.0 591,743 - -1.9 591,743 - -2.2 591,743 - -0.4 591,743 - -1.0 591,743 - -1.0 591,743 - -1.0 591,743 - +0.6 591,743 - -0.9 591,743 - -2.2 591,743 - -1.2 591,743 - +0.9 591,743 - -1.0 591,743 - -0.5 591,743 - +0.3 591,750 + -0.6 591,750 + -0.7 591,750 + -1.2 591,750 + -1.4 591,751 - -1.7 591,751 - -0.7 591,751 - -1.6 591,751 - +0.0 591,751 - +1.3 591,751 - -1.4 591,788 + -0.8 591,789 - -0.7 591,789 - -0.0
Or see this region's nucleotide sequence