Strain Fitness in Variovorax sp. SCN45 around GFF5462

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5460 and GFF5461 are separated by 12 nucleotidesGFF5461 and GFF5462 overlap by 4 nucleotidesGFF5462 and GFF5463 overlap by 4 nucleotidesGFF5463 and GFF5464 overlap by 8 nucleotides GFF5460 - 3-oxo-tetronate 4-phosphate decarboxylase, at 91,087 to 91,752 GFF5460 GFF5461 - 2-dehydrotetronate isomerase (EC 5.3.1.35), at 91,765 to 92,583 GFF5461 GFF5462 - Cytosine deaminase (EC 3.5.4.1), at 92,580 to 93,776 GFF5462 GFF5463 - RidA/YER057c/UK114 superfamily protein, at 93,773 to 94,240 GFF5463 GFF5464 - Transcriptional regulator, AcrR family, at 94,233 to 94,919 GFF5464 Position (kb) 92 93 94Strain fitness (log2 ratio) -2 -1 0 1 2at 91.753 kb on + strandat 91.753 kb on + strandat 91.754 kb on - strandat 91.754 kb on - strandat 91.864 kb on + strand, within GFF5461at 91.864 kb on + strand, within GFF5461at 91.864 kb on + strand, within GFF5461at 91.864 kb on + strand, within GFF5461at 91.865 kb on - strand, within GFF5461at 91.865 kb on - strand, within GFF5461at 91.865 kb on - strand, within GFF5461at 91.876 kb on + strand, within GFF5461at 92.128 kb on + strand, within GFF5461at 92.128 kb on + strand, within GFF5461at 92.128 kb on + strand, within GFF5461at 92.128 kb on + strand, within GFF5461at 92.129 kb on - strand, within GFF5461at 92.129 kb on - strand, within GFF5461at 92.129 kb on - strand, within GFF5461at 92.183 kb on + strand, within GFF5461at 92.184 kb on - strand, within GFF5461at 92.184 kb on - strand, within GFF5461at 92.302 kb on + strand, within GFF5461at 92.302 kb on + strand, within GFF5461at 92.302 kb on + strand, within GFF5461at 92.303 kb on - strand, within GFF5461at 92.303 kb on - strand, within GFF5461at 92.303 kb on - strand, within GFF5461at 92.339 kb on - strand, within GFF5461at 92.350 kb on + strand, within GFF5461at 92.350 kb on + strand, within GFF5461at 92.351 kb on - strand, within GFF5461at 92.351 kb on - strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.432 kb on - strand, within GFF5461at 92.432 kb on - strand, within GFF5461at 92.432 kb on - strand, within GFF5461at 92.432 kb on - strand, within GFF5461at 92.432 kb on - strand, within GFF5461at 92.432 kb on - strand, within GFF5461at 92.432 kb on - strand, within GFF5461at 92.437 kb on + strand, within GFF5461at 92.437 kb on + strand, within GFF5461at 92.437 kb on + strand, within GFF5461at 92.437 kb on + strand, within GFF5461at 92.437 kb on + strand, within GFF5461at 92.437 kb on + strand, within GFF5461at 92.438 kb on - strand, within GFF5461at 92.438 kb on - strand, within GFF5461at 92.503 kb on + strandat 92.503 kb on + strandat 92.737 kb on + strand, within GFF5462at 92.737 kb on + strand, within GFF5462at 92.737 kb on + strand, within GFF5462at 92.738 kb on - strand, within GFF5462at 92.766 kb on + strand, within GFF5462at 92.766 kb on + strand, within GFF5462at 92.766 kb on + strand, within GFF5462at 92.766 kb on + strand, within GFF5462at 92.766 kb on + strand, within GFF5462at 92.766 kb on + strand, within GFF5462at 92.766 kb on + strand, within GFF5462at 92.766 kb on + strand, within GFF5462at 92.766 kb on + strand, within GFF5462at 92.767 kb on - strand, within GFF5462at 92.767 kb on - strand, within GFF5462at 92.767 kb on - strand, within GFF5462at 92.767 kb on - strand, within GFF5462at 93.118 kb on - strand, within GFF5462at 93.397 kb on - strand, within GFF5462at 93.397 kb on - strand, within GFF5462at 93.397 kb on - strand, within GFF5462at 93.513 kb on + strand, within GFF5462at 93.513 kb on + strand, within GFF5462at 93.513 kb on + strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.519 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.529 kb on - strand, within GFF5462at 93.682 kb on + strandat 93.682 kb on + strandat 93.683 kb on - strandat 93.683 kb on - strandat 93.683 kb on - strandat 93.800 kb on + strandat 93.800 kb on + strandat 93.800 kb on + strandat 93.800 kb on + strandat 93.800 kb on + strandat 93.801 kb on - strandat 93.801 kb on - strandat 93.801 kb on - strandat 93.801 kb on - strandat 93.801 kb on - strandat 93.888 kb on - strand, within GFF5463at 94.070 kb on + strand, within GFF5463at 94.071 kb on - strand, within GFF5463at 94.071 kb on - strand, within GFF5463at 94.071 kb on - strand, within GFF5463at 94.071 kb on - strand, within GFF5463at 94.071 kb on - strand, within GFF5463at 94.092 kb on - strand, within GFF5463at 94.092 kb on - strand, within GFF5463at 94.100 kb on + strand, within GFF5463at 94.100 kb on + strand, within GFF5463at 94.100 kb on + strand, within GFF5463at 94.100 kb on + strand, within GFF5463at 94.100 kb on + strand, within GFF5463at 94.100 kb on + strand, within GFF5463at 94.100 kb on + strand, within GFF5463at 94.101 kb on - strand, within GFF5463at 94.101 kb on - strand, within GFF5463at 94.101 kb on - strand, within GFF5463at 94.101 kb on - strand, within GFF5463at 94.101 kb on - strand, within GFF5463at 94.101 kb on - strand, within GFF5463at 94.101 kb on - strand, within GFF5463at 94.125 kb on - strand, within GFF5463at 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.234 kb on + strandat 94.234 kb on + strandat 94.235 kb on - strandat 94.235 kb on - strandat 94.235 kb on - strandat 94.285 kb on + strandat 94.286 kb on - strandat 94.328 kb on - strand, within GFF5464at 94.328 kb on - strand, within GFF5464at 94.330 kb on + strand, within GFF5464at 94.330 kb on + strand, within GFF5464at 94.357 kb on + strand, within GFF5464at 94.357 kb on + strand, within GFF5464at 94.358 kb on - strand, within GFF5464at 94.358 kb on - strand, within GFF5464at 94.443 kb on + strand, within GFF5464at 94.444 kb on - strand, within GFF5464at 94.699 kb on + strand, within GFF5464at 94.699 kb on + strand, within GFF5464at 94.699 kb on + strand, within GFF5464at 94.699 kb on + strand, within GFF5464at 94.699 kb on + strand, within GFF5464at 94.699 kb on + strand, within GFF5464at 94.699 kb on + strand, within GFF5464at 94.700 kb on - strand, within GFF5464at 94.700 kb on - strand, within GFF5464at 94.700 kb on - strand, within GFF5464at 94.700 kb on - strand, within GFF5464at 94.702 kb on + strand, within GFF5464at 94.702 kb on + strand, within GFF5464at 94.702 kb on + strand, within GFF5464at 94.702 kb on + strand, within GFF5464at 94.702 kb on + strand, within GFF5464at 94.703 kb on - strand, within GFF5464at 94.703 kb on - strand, within GFF5464at 94.703 kb on - strand, within GFF5464

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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91,753 + -0.4
91,753 + -0.1
91,754 - +0.3
91,754 - +0.3
91,864 + GFF5461 0.12 +0.5
91,864 + GFF5461 0.12 -0.9
91,864 + GFF5461 0.12 -2.4
91,864 + GFF5461 0.12 +0.2
91,865 - GFF5461 0.12 -0.3
91,865 - GFF5461 0.12 -0.2
91,865 - GFF5461 0.12 -0.2
91,876 + GFF5461 0.14 -2.5
92,128 + GFF5461 0.44 +0.2
92,128 + GFF5461 0.44 +0.3
92,128 + GFF5461 0.44 -1.9
92,128 + GFF5461 0.44 +0.2
92,129 - GFF5461 0.44 +0.2
92,129 - GFF5461 0.44 +0.8
92,129 - GFF5461 0.44 +1.8
92,183 + GFF5461 0.51 -0.4
92,184 - GFF5461 0.51 +0.3
92,184 - GFF5461 0.51 -0.1
92,302 + GFF5461 0.66 -0.5
92,302 + GFF5461 0.66 +0.1
92,302 + GFF5461 0.66 -0.2
92,303 - GFF5461 0.66 +1.3
92,303 - GFF5461 0.66 -0.1
92,303 - GFF5461 0.66 -0.7
92,339 - GFF5461 0.70 -0.9
92,350 + GFF5461 0.71 -0.2
92,350 + GFF5461 0.71 +0.6
92,351 - GFF5461 0.72 -0.1
92,351 - GFF5461 0.72 +0.8
92,431 + GFF5461 0.81 -0.6
92,431 + GFF5461 0.81 -0.1
92,431 + GFF5461 0.81 +0.5
92,431 + GFF5461 0.81 -1.4
92,431 + GFF5461 0.81 -0.2
92,431 + GFF5461 0.81 +1.8
92,431 + GFF5461 0.81 -0.2
92,431 + GFF5461 0.81 -0.3
92,432 - GFF5461 0.81 +1.2
92,432 - GFF5461 0.81 +0.2
92,432 - GFF5461 0.81 -0.8
92,432 - GFF5461 0.81 +0.2
92,432 - GFF5461 0.81 -0.1
92,432 - GFF5461 0.81 +0.8
92,432 - GFF5461 0.81 +0.0
92,437 + GFF5461 0.82 +0.9
92,437 + GFF5461 0.82 +0.7
92,437 + GFF5461 0.82 +0.8
92,437 + GFF5461 0.82 -0.3
92,437 + GFF5461 0.82 +0.8
92,437 + GFF5461 0.82 -0.3
92,438 - GFF5461 0.82 -0.1
92,438 - GFF5461 0.82 +0.0
92,503 + -0.2
92,503 + -0.6
92,737 + GFF5462 0.13 -0.6
92,737 + GFF5462 0.13 +0.5
92,737 + GFF5462 0.13 -0.2
92,738 - GFF5462 0.13 -0.6
92,766 + GFF5462 0.16 -0.0
92,766 + GFF5462 0.16 +0.0
92,766 + GFF5462 0.16 +0.5
92,766 + GFF5462 0.16 -0.1
92,766 + GFF5462 0.16 -0.1
92,766 + GFF5462 0.16 -1.6
92,766 + GFF5462 0.16 -0.4
92,766 + GFF5462 0.16 -0.7
92,766 + GFF5462 0.16 -1.3
92,767 - GFF5462 0.16 -0.2
92,767 - GFF5462 0.16 -0.7
92,767 - GFF5462 0.16 +2.2
92,767 - GFF5462 0.16 -0.7
93,118 - GFF5462 0.45 -0.8
93,397 - GFF5462 0.68 -0.4
93,397 - GFF5462 0.68 -0.6
93,397 - GFF5462 0.68 -0.4
93,513 + GFF5462 0.78 -0.8
93,513 + GFF5462 0.78 +0.8
93,513 + GFF5462 0.78 -0.4
93,514 - GFF5462 0.78 +0.1
93,514 - GFF5462 0.78 -0.2
93,514 - GFF5462 0.78 -1.2
93,514 - GFF5462 0.78 -0.3
93,514 - GFF5462 0.78 +0.2
93,514 - GFF5462 0.78 -0.4
93,514 - GFF5462 0.78 -0.8
93,514 - GFF5462 0.78 -0.1
93,514 - GFF5462 0.78 +0.4
93,514 - GFF5462 0.78 -0.5
93,519 + GFF5462 0.78 -1.4
93,528 + GFF5462 0.79 +1.3
93,528 + GFF5462 0.79 +0.1
93,528 + GFF5462 0.79 +0.1
93,528 + GFF5462 0.79 -0.5
93,528 + GFF5462 0.79 -0.2
93,528 + GFF5462 0.79 -1.2
93,528 + GFF5462 0.79 -0.1
93,528 + GFF5462 0.79 -1.2
93,528 + GFF5462 0.79 +0.2
93,529 - GFF5462 0.79 +0.0
93,682 + +1.8
93,682 + -0.1
93,683 - +0.4
93,683 - -0.3
93,683 - -0.3
93,800 + -0.4
93,800 + +0.3
93,800 + -0.2
93,800 + +0.0
93,800 + -0.4
93,801 - -0.2
93,801 - +0.4
93,801 - +0.4
93,801 - -0.4
93,801 - -0.1
93,888 - GFF5463 0.25 -1.9
94,070 + GFF5463 0.63 +0.8
94,071 - GFF5463 0.64 -0.2
94,071 - GFF5463 0.64 -0.6
94,071 - GFF5463 0.64 -0.1
94,071 - GFF5463 0.64 -0.7
94,071 - GFF5463 0.64 -1.0
94,092 - GFF5463 0.68 -0.6
94,092 - GFF5463 0.68 -0.7
94,100 + GFF5463 0.70 +0.4
94,100 + GFF5463 0.70 +0.2
94,100 + GFF5463 0.70 +0.0
94,100 + GFF5463 0.70 -0.9
94,100 + GFF5463 0.70 +0.2
94,100 + GFF5463 0.70 -0.4
94,100 + GFF5463 0.70 +0.0
94,101 - GFF5463 0.70 -0.6
94,101 - GFF5463 0.70 -0.0
94,101 - GFF5463 0.70 -0.3
94,101 - GFF5463 0.70 -0.4
94,101 - GFF5463 0.70 -0.4
94,101 - GFF5463 0.70 -0.8
94,101 - GFF5463 0.70 +0.2
94,125 - GFF5463 0.75 +2.3
94,214 + +0.0
94,214 + -0.3
94,214 + +0.8
94,214 + -0.7
94,214 + -0.6
94,214 + -0.7
94,214 + -0.8
94,214 + -0.9
94,214 + +0.2
94,214 + +0.0
94,214 + -0.1
94,214 + +1.0
94,215 - -0.6
94,215 - +0.1
94,215 - -0.2
94,215 - -0.8
94,215 - -0.6
94,215 - -1.1
94,215 - +0.3
94,215 - +0.2
94,215 - +0.3
94,215 - +0.1
94,215 - +0.1
94,215 - -0.3
94,234 + -0.6
94,234 + -0.0
94,235 - -1.1
94,235 - +0.7
94,235 - -0.2
94,285 + -0.2
94,286 - -0.1
94,328 - GFF5464 0.14 -1.1
94,328 - GFF5464 0.14 -0.1
94,330 + GFF5464 0.14 -0.4
94,330 + GFF5464 0.14 +0.2
94,357 + GFF5464 0.18 -0.7
94,357 + GFF5464 0.18 +0.0
94,358 - GFF5464 0.18 -0.2
94,358 - GFF5464 0.18 +0.0
94,443 + GFF5464 0.31 +0.3
94,444 - GFF5464 0.31 -0.6
94,699 + GFF5464 0.68 +2.3
94,699 + GFF5464 0.68 -0.5
94,699 + GFF5464 0.68 -0.5
94,699 + GFF5464 0.68 +0.8
94,699 + GFF5464 0.68 +0.1
94,699 + GFF5464 0.68 -0.2
94,699 + GFF5464 0.68 +0.0
94,700 - GFF5464 0.68 -0.3
94,700 - GFF5464 0.68 +0.5
94,700 - GFF5464 0.68 -0.7
94,700 - GFF5464 0.68 +1.8
94,702 + GFF5464 0.68 +1.2
94,702 + GFF5464 0.68 -0.2
94,702 + GFF5464 0.68 -1.7
94,702 + GFF5464 0.68 +1.1
94,702 + GFF5464 0.68 -2.3
94,703 - GFF5464 0.68 -0.4
94,703 - GFF5464 0.68 -0.5
94,703 - GFF5464 0.68 -1.2

Or see this region's nucleotide sequence