Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5388 and GFF5389 are separated by 66 nucleotides GFF5389 and GFF5390 are separated by 145 nucleotides GFF5390 and GFF5391 are separated by 45 nucleotides GFF5391 and GFF5392 overlap by 20 nucleotides GFF5392 and GFF5393 are separated by 1 nucleotides
GFF5388 - Two-component response regulatory protein BP2547, at 15,207 to 15,881
GFF5388
GFF5389 - Transcriptional regulator, MarR family, at 15,948 to 16,433
GFF5389
GFF5390 - RecA protein, at 16,579 to 17,685
GFF5390
GFF5391 - Regulatory protein RecX, at 17,731 to 18,192
GFF5391
GFF5392 - no description, at 18,173 to 18,604
GFF5392
GFF5393 - mandelate racemase/muconate lactonizing enzyme family protein, at 18,606 to 19,715
GFF5393
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1
2 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.949 kb on + strand at 15.950 kb on - strand at 15.950 kb on - strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.981 kb on + strand at 15.981 kb on + strand at 16.439 kb on + strand at 16.440 kb on - strand at 16.474 kb on - strand at 16.493 kb on + strand at 16.493 kb on + strand at 16.493 kb on + strand at 16.493 kb on + strand at 16.494 kb on - strand at 16.494 kb on - strand at 16.498 kb on + strand at 16.498 kb on + strand at 16.498 kb on + strand at 16.498 kb on + strand at 16.499 kb on - strand at 16.499 kb on - strand at 16.499 kb on - strand at 16.499 kb on - strand at 16.499 kb on - strand at 16.499 kb on - strand at 16.561 kb on + strand at 16.561 kb on + strand at 16.561 kb on + strand at 16.561 kb on + strand at 16.561 kb on + strand at 16.561 kb on + strand at 16.561 kb on + strand at 16.562 kb on - strand at 16.562 kb on - strand at 16.562 kb on - strand at 16.807 kb on + strand, within GFF5390 at 16.807 kb on + strand, within GFF5390 at 16.808 kb on - strand, within GFF5390 at 16.808 kb on - strand, within GFF5390 at 16.808 kb on - strand, within GFF5390 at 16.921 kb on + strand, within GFF5390 at 16.921 kb on + strand, within GFF5390 at 16.921 kb on + strand, within GFF5390 at 16.921 kb on + strand, within GFF5390 at 16.921 kb on + strand, within GFF5390 at 16.921 kb on + strand, within GFF5390 at 16.922 kb on - strand, within GFF5390 at 16.922 kb on - strand, within GFF5390 at 16.922 kb on - strand, within GFF5390 at 16.922 kb on - strand, within GFF5390 at 16.922 kb on - strand, within GFF5390 at 16.922 kb on - strand, within GFF5390 at 16.922 kb on - strand, within GFF5390 at 17.266 kb on + strand, within GFF5390 at 17.266 kb on + strand, within GFF5390 at 17.266 kb on + strand, within GFF5390 at 17.266 kb on + strand, within GFF5390 at 17.266 kb on + strand, within GFF5390 at 17.266 kb on + strand, within GFF5390 at 17.267 kb on - strand, within GFF5390 at 17.267 kb on - strand, within GFF5390 at 17.267 kb on - strand, within GFF5390 at 17.267 kb on - strand, within GFF5390 at 17.485 kb on + strand, within GFF5390 at 17.485 kb on + strand, within GFF5390 at 17.491 kb on + strand, within GFF5390 at 17.491 kb on + strand, within GFF5390 at 17.492 kb on - strand, within GFF5390 at 17.492 kb on - strand, within GFF5390 at 17.492 kb on - strand, within GFF5390 at 17.579 kb on - strand at 17.683 kb on + strand at 17.683 kb on + strand at 17.683 kb on + strand at 17.683 kb on + strand at 17.683 kb on + strand at 17.683 kb on + strand at 17.683 kb on + strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 18.254 kb on + strand, within GFF5392 at 18.254 kb on + strand, within GFF5392 at 18.255 kb on - strand, within GFF5392 at 18.255 kb on - strand, within GFF5392 at 18.255 kb on - strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.450 kb on + strand, within GFF5392 at 18.450 kb on + strand, within GFF5392 at 18.450 kb on + strand, within GFF5392 at 18.450 kb on + strand, within GFF5392 at 18.451 kb on - strand, within GFF5392
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 15,586 + GFF5388 0.56 -0.6 15,586 + GFF5388 0.56 +0.2 15,586 + GFF5388 0.56 -0.2 15,586 + GFF5388 0.56 +0.5 15,586 + GFF5388 0.56 -0.6 15,586 + GFF5388 0.56 -0.2 15,586 + GFF5388 0.56 -0.2 15,586 + GFF5388 0.56 -0.5 15,586 + GFF5388 0.56 -0.5 15,586 + GFF5388 0.56 -0.3 15,586 + GFF5388 0.56 +0.3 15,586 + GFF5388 0.56 +0.4 15,586 + GFF5388 0.56 -1.5 15,586 + GFF5388 0.56 -0.2 15,586 + GFF5388 0.56 -0.8 15,586 + GFF5388 0.56 +0.1 15,586 + GFF5388 0.56 -0.6 15,586 + GFF5388 0.56 -0.1 15,586 + GFF5388 0.56 -2.7 15,586 + GFF5388 0.56 +0.1 15,587 - GFF5388 0.56 -0.5 15,587 - GFF5388 0.56 -0.7 15,587 - GFF5388 0.56 -0.3 15,587 - GFF5388 0.56 -0.0 15,587 - GFF5388 0.56 -1.2 15,587 - GFF5388 0.56 +0.2 15,587 - GFF5388 0.56 -0.1 15,587 - GFF5388 0.56 +0.2 15,587 - GFF5388 0.56 -0.7 15,587 - GFF5388 0.56 +0.4 15,587 - GFF5388 0.56 +1.8 15,587 - GFF5388 0.56 +0.8 15,587 - GFF5388 0.56 +0.3 15,587 - GFF5388 0.56 -0.4 15,587 - GFF5388 0.56 -0.2 15,587 - GFF5388 0.56 -0.4 15,587 - GFF5388 0.56 -0.3 15,587 - GFF5388 0.56 -1.2 15,587 - GFF5388 0.56 +0.5 15,949 + -0.6 15,950 - -0.5 15,950 - -0.1 15,959 + -0.5 15,959 + -1.9 15,959 + -0.5 15,959 + -0.2 15,959 + +1.2 15,959 + +1.2 15,959 + -2.1 15,959 + +0.3 15,959 + -0.8 15,959 + +0.2 15,959 + -1.1 15,959 + -0.9 15,960 - -0.7 15,960 - -0.7 15,960 - -0.2 15,960 - -1.1 15,960 - -0.8 15,960 - -0.4 15,961 + -1.1 15,961 + -0.9 15,961 + -0.6 15,961 + +0.1 15,961 + -0.1 15,961 + +0.8 15,961 + -0.4 15,961 + +0.2 15,961 + -0.6 15,961 + -0.3 15,961 + +0.6 15,961 + -1.7 15,961 + -0.5 15,961 + +1.5 15,962 - -0.2 15,962 - -0.1 15,962 - -0.3 15,962 - +0.8 15,962 - -0.8 15,962 - +0.8 15,962 - -0.2 15,962 - -0.4 15,962 - -1.4 15,962 - +0.1 15,981 + -0.4 15,981 + +0.2 16,439 + +0.5 16,440 - +1.2 16,474 - +0.3 16,493 + +0.8 16,493 + -0.9 16,493 + -0.0 16,493 + -0.6 16,494 - -1.7 16,494 - +0.1 16,498 + +1.2 16,498 + -0.8 16,498 + -0.3 16,498 + +0.3 16,499 - +0.7 16,499 - +0.3 16,499 - -0.3 16,499 - -0.4 16,499 - -0.4 16,499 - +0.2 16,561 + +0.3 16,561 + +0.3 16,561 + -0.4 16,561 + -1.2 16,561 + +0.8 16,561 + -0.2 16,561 + -0.9 16,562 - -0.2 16,562 - -0.9 16,562 - -0.5 16,807 + GFF5390 0.21 -0.2 16,807 + GFF5390 0.21 -1.3 16,808 - GFF5390 0.21 +0.2 16,808 - GFF5390 0.21 +0.0 16,808 - GFF5390 0.21 -1.4 16,921 + GFF5390 0.31 -1.3 16,921 + GFF5390 0.31 -1.1 16,921 + GFF5390 0.31 -1.6 16,921 + GFF5390 0.31 +0.4 16,921 + GFF5390 0.31 -0.6 16,921 + GFF5390 0.31 -1.1 16,922 - GFF5390 0.31 -1.1 16,922 - GFF5390 0.31 -1.1 16,922 - GFF5390 0.31 -1.6 16,922 - GFF5390 0.31 -0.1 16,922 - GFF5390 0.31 -0.7 16,922 - GFF5390 0.31 -1.1 16,922 - GFF5390 0.31 +1.0 17,266 + GFF5390 0.62 -1.4 17,266 + GFF5390 0.62 -1.1 17,266 + GFF5390 0.62 -2.2 17,266 + GFF5390 0.62 -0.6 17,266 + GFF5390 0.62 +0.4 17,266 + GFF5390 0.62 +0.4 17,267 - GFF5390 0.62 +0.6 17,267 - GFF5390 0.62 +0.0 17,267 - GFF5390 0.62 -1.3 17,267 - GFF5390 0.62 -0.2 17,485 + GFF5390 0.82 +0.9 17,485 + GFF5390 0.82 -0.3 17,491 + GFF5390 0.82 -0.2 17,491 + GFF5390 0.82 -1.2 17,492 - GFF5390 0.82 -1.7 17,492 - GFF5390 0.82 +0.4 17,492 - GFF5390 0.82 -0.6 17,579 - -0.5 17,683 + +0.6 17,683 + +0.2 17,683 + +0.0 17,683 + -0.4 17,683 + -0.2 17,683 + -0.4 17,683 + -0.7 17,684 - -0.7 17,684 - +0.1 17,684 - -0.1 17,684 - -0.2 17,684 - -0.3 17,684 - -0.1 17,684 - -0.6 17,684 - -0.5 17,684 - -0.3 17,684 - -1.7 17,684 - +0.8 17,684 - -0.2 18,254 + GFF5392 0.19 -1.2 18,254 + GFF5392 0.19 +0.0 18,255 - GFF5392 0.19 -0.6 18,255 - GFF5392 0.19 -0.9 18,255 - GFF5392 0.19 +0.0 18,446 + GFF5392 0.63 -1.7 18,446 + GFF5392 0.63 -0.2 18,446 + GFF5392 0.63 -0.4 18,446 + GFF5392 0.63 -0.6 18,446 + GFF5392 0.63 -0.4 18,446 + GFF5392 0.63 -0.6 18,446 + GFF5392 0.63 +0.8 18,446 + GFF5392 0.63 -0.5 18,446 + GFF5392 0.63 +1.0 18,446 + GFF5392 0.63 +0.1 18,446 + GFF5392 0.63 -1.0 18,446 + GFF5392 0.63 +0.6 18,446 + GFF5392 0.63 -1.6 18,446 + GFF5392 0.63 -0.5 18,446 + GFF5392 0.63 -0.5 18,447 - GFF5392 0.63 -0.1 18,447 - GFF5392 0.63 -0.3 18,447 - GFF5392 0.63 -0.6 18,447 - GFF5392 0.63 +0.2 18,447 - GFF5392 0.63 +0.8 18,447 - GFF5392 0.63 -0.1 18,447 - GFF5392 0.63 +1.8 18,447 - GFF5392 0.63 +0.0 18,447 - GFF5392 0.63 -1.4 18,447 - GFF5392 0.63 +1.8 18,447 - GFF5392 0.63 -0.1 18,447 - GFF5392 0.63 +0.3 18,447 - GFF5392 0.63 -0.0 18,447 - GFF5392 0.63 -0.1 18,447 - GFF5392 0.63 -0.6 18,447 - GFF5392 0.63 -0.1 18,447 - GFF5392 0.63 -0.4 18,447 - GFF5392 0.63 +0.5 18,447 - GFF5392 0.63 +0.8 18,447 - GFF5392 0.63 -0.5 18,447 - GFF5392 0.63 +0.4 18,447 - GFF5392 0.63 +0.2 18,450 + GFF5392 0.64 +0.2 18,450 + GFF5392 0.64 -0.1 18,450 + GFF5392 0.64 +0.1 18,450 + GFF5392 0.64 -0.6 18,451 - GFF5392 0.64 +0.1
Or see this region's nucleotide sequence