Strain Fitness in Variovorax sp. SCN45 around GFF5227

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5225 and GFF5226 overlap by 4 nucleotidesGFF5226 and GFF5227 are separated by 14 nucleotidesGFF5227 and GFF5228 are separated by 12 nucleotides GFF5225 - hypothetical protein, at 88,635 to 88,823 GFF5225 GFF5226 - Probable cytochrome c2, at 88,820 to 89,536 GFF5226 GFF5227 - Putative diheme cytochrome c-553, at 89,551 to 90,837 GFF5227 GFF5228 - Arachidonate 15-lipoxygenase precursor (EC 1.13.11.33), at 90,850 to 92,859 GFF5228 Position (kb) 89 90 91Strain fitness (log2 ratio) -2 -1 0 1 2at 88.566 kb on - strandat 88.566 kb on - strandat 88.566 kb on - strandat 89.021 kb on + strand, within GFF5226at 89.081 kb on + strand, within GFF5226at 89.081 kb on + strand, within GFF5226at 89.081 kb on + strand, within GFF5226at 89.082 kb on - strand, within GFF5226at 89.082 kb on - strand, within GFF5226at 89.082 kb on - strand, within GFF5226at 89.082 kb on - strand, within GFF5226at 89.082 kb on - strand, within GFF5226at 89.130 kb on - strand, within GFF5226at 89.153 kb on + strand, within GFF5226at 89.153 kb on + strand, within GFF5226at 89.327 kb on + strand, within GFF5226at 89.328 kb on - strand, within GFF5226at 89.328 kb on - strand, within GFF5226at 89.714 kb on - strand, within GFF5227at 89.714 kb on - strand, within GFF5227at 89.771 kb on - strand, within GFF5227at 89.812 kb on + strand, within GFF5227at 89.812 kb on + strand, within GFF5227at 89.812 kb on + strand, within GFF5227at 89.812 kb on + strand, within GFF5227at 89.813 kb on - strand, within GFF5227at 89.980 kb on + strand, within GFF5227at 89.981 kb on - strand, within GFF5227at 89.981 kb on - strand, within GFF5227at 89.981 kb on - strand, within GFF5227at 89.986 kb on + strand, within GFF5227at 89.986 kb on + strand, within GFF5227at 89.987 kb on - strand, within GFF5227at 90.148 kb on + strand, within GFF5227at 90.148 kb on + strand, within GFF5227at 90.262 kb on + strand, within GFF5227at 90.263 kb on - strand, within GFF5227at 90.407 kb on - strand, within GFF5227at 90.442 kb on + strand, within GFF5227at 90.545 kb on - strand, within GFF5227at 90.545 kb on - strand, within GFF5227at 90.772 kb on + strandat 90.772 kb on + strandat 90.772 kb on + strandat 91.040 kb on + strandat 91.041 kb on - strandat 91.041 kb on - strandat 91.061 kb on + strand, within GFF5228at 91.062 kb on - strand, within GFF5228at 91.062 kb on - strand, within GFF5228at 91.062 kb on - strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.221 kb on - strand, within GFF5228at 91.400 kb on + strand, within GFF5228at 91.400 kb on + strand, within GFF5228at 91.401 kb on - strand, within GFF5228at 91.401 kb on - strand, within GFF5228at 91.404 kb on - strand, within GFF5228at 91.404 kb on - strand, within GFF5228at 91.404 kb on - strand, within GFF5228at 91.415 kb on + strand, within GFF5228at 91.476 kb on - strand, within GFF5228at 91.545 kb on - strand, within GFF5228at 91.800 kb on - strand, within GFF5228at 91.800 kb on - strand, within GFF5228

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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88,566 - -0.5
88,566 - -0.4
88,566 - +0.0
89,021 + GFF5226 0.28 +1.8
89,081 + GFF5226 0.36 -0.1
89,081 + GFF5226 0.36 -0.3
89,081 + GFF5226 0.36 -0.6
89,082 - GFF5226 0.37 -0.0
89,082 - GFF5226 0.37 -0.8
89,082 - GFF5226 0.37 +1.0
89,082 - GFF5226 0.37 +1.0
89,082 - GFF5226 0.37 +0.4
89,130 - GFF5226 0.43 +1.2
89,153 + GFF5226 0.46 +0.1
89,153 + GFF5226 0.46 +0.1
89,327 + GFF5226 0.71 -0.1
89,328 - GFF5226 0.71 -0.5
89,328 - GFF5226 0.71 -0.3
89,714 - GFF5227 0.13 -2.0
89,714 - GFF5227 0.13 +0.8
89,771 - GFF5227 0.17 -0.3
89,812 + GFF5227 0.20 -1.7
89,812 + GFF5227 0.20 +0.0
89,812 + GFF5227 0.20 -1.4
89,812 + GFF5227 0.20 -1.5
89,813 - GFF5227 0.20 +0.0
89,980 + GFF5227 0.33 -0.8
89,981 - GFF5227 0.33 -0.3
89,981 - GFF5227 0.33 -0.6
89,981 - GFF5227 0.33 +0.5
89,986 + GFF5227 0.34 -0.7
89,986 + GFF5227 0.34 -0.2
89,987 - GFF5227 0.34 -0.5
90,148 + GFF5227 0.46 -0.8
90,148 + GFF5227 0.46 -0.3
90,262 + GFF5227 0.55 -1.4
90,263 - GFF5227 0.55 +0.1
90,407 - GFF5227 0.67 -0.7
90,442 + GFF5227 0.69 -0.5
90,545 - GFF5227 0.77 -1.0
90,545 - GFF5227 0.77 +0.2
90,772 + -0.7
90,772 + -0.8
90,772 + -0.7
91,040 + +0.3
91,041 - +0.3
91,041 - -0.5
91,061 + GFF5228 0.10 +0.2
91,062 - GFF5228 0.11 +0.5
91,062 - GFF5228 0.11 -0.6
91,062 - GFF5228 0.11 -0.2
91,205 + GFF5228 0.18 -0.1
91,205 + GFF5228 0.18 +0.6
91,205 + GFF5228 0.18 -0.5
91,205 + GFF5228 0.18 +0.6
91,205 + GFF5228 0.18 -0.3
91,205 + GFF5228 0.18 -1.0
91,205 + GFF5228 0.18 +0.0
91,205 + GFF5228 0.18 +1.4
91,205 + GFF5228 0.18 +1.6
91,205 + GFF5228 0.18 +1.6
91,205 + GFF5228 0.18 -0.0
91,205 + GFF5228 0.18 -0.5
91,205 + GFF5228 0.18 -0.9
91,205 + GFF5228 0.18 -0.3
91,206 - GFF5228 0.18 +0.5
91,206 - GFF5228 0.18 +0.5
91,206 - GFF5228 0.18 -0.9
91,206 - GFF5228 0.18 +0.1
91,206 - GFF5228 0.18 -0.0
91,206 - GFF5228 0.18 -0.4
91,206 - GFF5228 0.18 +0.4
91,206 - GFF5228 0.18 +0.3
91,206 - GFF5228 0.18 -0.7
91,206 - GFF5228 0.18 -0.4
91,206 - GFF5228 0.18 +0.6
91,206 - GFF5228 0.18 +0.2
91,206 - GFF5228 0.18 -0.7
91,221 - GFF5228 0.18 +0.1
91,400 + GFF5228 0.27 +0.8
91,400 + GFF5228 0.27 -0.1
91,401 - GFF5228 0.27 -0.7
91,401 - GFF5228 0.27 -0.4
91,404 - GFF5228 0.28 -1.3
91,404 - GFF5228 0.28 +0.2
91,404 - GFF5228 0.28 -0.5
91,415 + GFF5228 0.28 +0.1
91,476 - GFF5228 0.31 -0.7
91,545 - GFF5228 0.35 -0.5
91,800 - GFF5228 0.47 -0.8
91,800 - GFF5228 0.47 -0.3

Or see this region's nucleotide sequence