Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5224 and GFF5225 are separated by 106 nucleotides GFF5225 and GFF5226 overlap by 4 nucleotides GFF5226 and GFF5227 are separated by 14 nucleotides
GFF5224 - Uncharacterized MFS-type transporter, at 87,257 to 88,528
GFF5224
GFF5225 - hypothetical protein, at 88,635 to 88,823
GFF5225
GFF5226 - Probable cytochrome c2, at 88,820 to 89,536
GFF5226
GFF5227 - Putative diheme cytochrome c-553, at 89,551 to 90,837
GFF5227
Position (kb) 88
89
90 Strain fitness (log2 ratio) -2
-1
0
1
2 at 88.022 kb on + strand, within GFF5224 at 88.022 kb on + strand, within GFF5224 at 88.022 kb on + strand, within GFF5224 at 88.220 kb on + strand, within GFF5224 at 88.221 kb on - strand, within GFF5224 at 88.271 kb on + strand, within GFF5224 at 88.386 kb on + strand, within GFF5224 at 88.406 kb on + strand at 88.406 kb on + strand at 88.566 kb on - strand at 88.566 kb on - strand at 88.566 kb on - strand at 89.021 kb on + strand, within GFF5226 at 89.081 kb on + strand, within GFF5226 at 89.081 kb on + strand, within GFF5226 at 89.081 kb on + strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.130 kb on - strand, within GFF5226 at 89.153 kb on + strand, within GFF5226 at 89.153 kb on + strand, within GFF5226 at 89.327 kb on + strand, within GFF5226 at 89.328 kb on - strand, within GFF5226 at 89.328 kb on - strand, within GFF5226 at 89.714 kb on - strand, within GFF5227 at 89.714 kb on - strand, within GFF5227 at 89.771 kb on - strand, within GFF5227 at 89.812 kb on + strand, within GFF5227 at 89.812 kb on + strand, within GFF5227 at 89.812 kb on + strand, within GFF5227 at 89.812 kb on + strand, within GFF5227 at 89.813 kb on - strand, within GFF5227 at 89.980 kb on + strand, within GFF5227 at 89.981 kb on - strand, within GFF5227 at 89.981 kb on - strand, within GFF5227 at 89.981 kb on - strand, within GFF5227 at 89.986 kb on + strand, within GFF5227 at 89.986 kb on + strand, within GFF5227 at 89.987 kb on - strand, within GFF5227 at 90.148 kb on + strand, within GFF5227 at 90.148 kb on + strand, within GFF5227 at 90.262 kb on + strand, within GFF5227 at 90.263 kb on - strand, within GFF5227 at 90.407 kb on - strand, within GFF5227 at 90.442 kb on + strand, within GFF5227
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 88,022 + GFF5224 0.60 +0.6 88,022 + GFF5224 0.60 +0.0 88,022 + GFF5224 0.60 -0.6 88,220 + GFF5224 0.76 +0.3 88,221 - GFF5224 0.76 -1.2 88,271 + GFF5224 0.80 -0.3 88,386 + GFF5224 0.89 +0.4 88,406 + +0.1 88,406 + -1.2 88,566 - -0.5 88,566 - -0.4 88,566 - +0.0 89,021 + GFF5226 0.28 +1.8 89,081 + GFF5226 0.36 -0.1 89,081 + GFF5226 0.36 -0.3 89,081 + GFF5226 0.36 -0.6 89,082 - GFF5226 0.37 -0.0 89,082 - GFF5226 0.37 -0.8 89,082 - GFF5226 0.37 +1.0 89,082 - GFF5226 0.37 +1.0 89,082 - GFF5226 0.37 +0.4 89,130 - GFF5226 0.43 +1.2 89,153 + GFF5226 0.46 +0.1 89,153 + GFF5226 0.46 +0.1 89,327 + GFF5226 0.71 -0.1 89,328 - GFF5226 0.71 -0.5 89,328 - GFF5226 0.71 -0.3 89,714 - GFF5227 0.13 -2.0 89,714 - GFF5227 0.13 +0.8 89,771 - GFF5227 0.17 -0.3 89,812 + GFF5227 0.20 -1.7 89,812 + GFF5227 0.20 +0.0 89,812 + GFF5227 0.20 -1.4 89,812 + GFF5227 0.20 -1.5 89,813 - GFF5227 0.20 +0.0 89,980 + GFF5227 0.33 -0.8 89,981 - GFF5227 0.33 -0.3 89,981 - GFF5227 0.33 -0.6 89,981 - GFF5227 0.33 +0.5 89,986 + GFF5227 0.34 -0.7 89,986 + GFF5227 0.34 -0.2 89,987 - GFF5227 0.34 -0.5 90,148 + GFF5227 0.46 -0.8 90,148 + GFF5227 0.46 -0.3 90,262 + GFF5227 0.55 -1.4 90,263 - GFF5227 0.55 +0.1 90,407 - GFF5227 0.67 -0.7 90,442 + GFF5227 0.69 -0.5
Or see this region's nucleotide sequence