Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5198 and GFF5199 overlap by 4 nucleotides GFF5199 and GFF5200 are separated by 8 nucleotides
GFF5198 - ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose), at 58,190 to 59,224
GFF5198
GFF5199 - Galactofuranose ABC transporter, permease protein 2, at 59,221 to 60,258
GFF5199
GFF5200 - L-arabonate dehydratase (EC 4.2.1.25), at 60,267 to 62,003
GFF5200
Position (kb) 59
60
61 Strain fitness (log2 ratio) -2
-1
0
1 at 58.431 kb on + strand, within GFF5198 at 58.670 kb on + strand, within GFF5198 at 58.671 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.871 kb on + strand, within GFF5198 at 58.872 kb on - strand, within GFF5198 at 59.073 kb on - strand, within GFF5198 at 59.073 kb on - strand, within GFF5198 at 59.073 kb on - strand, within GFF5198 at 59.178 kb on + strand at 59.179 kb on - strand at 59.179 kb on - strand at 59.314 kb on + strand at 59.695 kb on + strand, within GFF5199 at 59.696 kb on - strand, within GFF5199 at 59.870 kb on - strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.993 kb on - strand, within GFF5199 at 60.091 kb on + strand, within GFF5199 at 60.091 kb on + strand, within GFF5199 at 60.262 kb on + strand at 60.327 kb on + strand at 60.676 kb on + strand, within GFF5200 at 60.948 kb on + strand, within GFF5200 at 60.948 kb on + strand, within GFF5200 at 61.218 kb on + strand, within GFF5200 at 61.219 kb on - strand, within GFF5200
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 58,431 + GFF5198 0.23 +0.3 58,670 + GFF5198 0.46 -0.0 58,671 - GFF5198 0.46 -0.4 58,674 - GFF5198 0.47 +0.1 58,674 - GFF5198 0.47 -0.4 58,674 - GFF5198 0.47 +0.5 58,871 + GFF5198 0.66 -0.1 58,872 - GFF5198 0.66 -0.4 59,073 - GFF5198 0.85 -1.3 59,073 - GFF5198 0.85 +1.0 59,073 - GFF5198 0.85 -0.8 59,178 + -0.1 59,179 - -1.2 59,179 - -1.0 59,314 + +0.2 59,695 + GFF5199 0.46 -1.3 59,696 - GFF5199 0.46 +0.1 59,870 - GFF5199 0.63 -1.1 59,992 + GFF5199 0.74 -0.2 59,992 + GFF5199 0.74 +0.3 59,992 + GFF5199 0.74 -1.0 59,992 + GFF5199 0.74 -2.0 59,993 - GFF5199 0.74 -0.3 60,091 + GFF5199 0.84 +0.0 60,091 + GFF5199 0.84 -0.4 60,262 + +0.1 60,327 + +0.9 60,676 + GFF5200 0.24 -0.3 60,948 + GFF5200 0.39 -0.2 60,948 + GFF5200 0.39 -0.8 61,218 + GFF5200 0.55 -0.7 61,219 - GFF5200 0.55 +0.2
Or see this region's nucleotide sequence