Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5193 and GFF5194 are separated by 12 nucleotides GFF5194 and GFF5195 overlap by 4 nucleotides
GFF5193 - Galactofuranose ABC transporter, substrate-binding protein, at 51,705 to 52,670
GFF5193
GFF5194 - L-arabinose ABC transporter, substrate-binding protein AraF, at 52,683 to 53,753
GFF5194
GFF5195 - L-arabinose ABC transporter, ATP-binding protein AraG, at 53,750 to 55,321
GFF5195
Position (kb) 52
53
54 Strain fitness (log2 ratio) -1
0
1 at 51.948 kb on + strand, within GFF5193 at 51.948 kb on + strand, within GFF5193 at 52.090 kb on - strand, within GFF5193 at 52.090 kb on - strand, within GFF5193 at 52.666 kb on - strand at 52.842 kb on + strand, within GFF5194 at 52.861 kb on - strand, within GFF5194 at 52.861 kb on - strand, within GFF5194 at 53.064 kb on + strand, within GFF5194 at 53.064 kb on + strand, within GFF5194 at 53.208 kb on + strand, within GFF5194 at 53.238 kb on + strand, within GFF5194 at 53.358 kb on + strand, within GFF5194 at 53.358 kb on + strand, within GFF5194 at 53.358 kb on + strand, within GFF5194 at 53.359 kb on - strand, within GFF5194 at 53.359 kb on - strand, within GFF5194 at 53.634 kb on + strand, within GFF5194 at 53.634 kb on + strand, within GFF5194 at 53.635 kb on - strand, within GFF5194 at 53.665 kb on - strand at 53.730 kb on + strand at 53.730 kb on + strand at 53.730 kb on + strand at 53.730 kb on + strand at 53.951 kb on + strand, within GFF5195 at 53.952 kb on - strand, within GFF5195 at 53.952 kb on - strand, within GFF5195 at 54.134 kb on + strand, within GFF5195 at 54.134 kb on + strand, within GFF5195
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 51,948 + GFF5193 0.25 +0.1 51,948 + GFF5193 0.25 +0.4 52,090 - GFF5193 0.40 -0.6 52,090 - GFF5193 0.40 +0.8 52,666 - +0.6 52,842 + GFF5194 0.15 +0.0 52,861 - GFF5194 0.17 +1.2 52,861 - GFF5194 0.17 -0.9 53,064 + GFF5194 0.36 -0.4 53,064 + GFF5194 0.36 -0.5 53,208 + GFF5194 0.49 -0.8 53,238 + GFF5194 0.52 -0.8 53,358 + GFF5194 0.63 -0.7 53,358 + GFF5194 0.63 -0.7 53,358 + GFF5194 0.63 -0.1 53,359 - GFF5194 0.63 -1.0 53,359 - GFF5194 0.63 -0.5 53,634 + GFF5194 0.89 +0.3 53,634 + GFF5194 0.89 -1.3 53,635 - GFF5194 0.89 -0.7 53,665 - +0.8 53,730 + -0.6 53,730 + -0.4 53,730 + +1.2 53,730 + +0.0 53,951 + GFF5195 0.13 -0.2 53,952 - GFF5195 0.13 -1.2 53,952 - GFF5195 0.13 -0.4 54,134 + GFF5195 0.24 -0.7 54,134 + GFF5195 0.24 -0.7
Or see this region's nucleotide sequence