Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5116 and GFF5117 are separated by 126 nucleotides GFF5117 and GFF5118 are separated by 28 nucleotides
GFF5116 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 217,233 to 218,735
GFF5116
GFF5117 - Transcriptional regulator, LysR family, at 218,862 to 219,746
GFF5117
GFF5118 - gluconolactonase family protein, at 219,775 to 220,707
GFF5118
Position (kb) 218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 217.885 kb on - strand, within GFF5116 at 217.886 kb on - strand, within GFF5116 at 218.302 kb on + strand, within GFF5116 at 218.303 kb on - strand, within GFF5116 at 218.303 kb on - strand, within GFF5116 at 218.305 kb on + strand, within GFF5116 at 218.305 kb on + strand, within GFF5116 at 218.305 kb on + strand, within GFF5116 at 218.305 kb on + strand, within GFF5116 at 218.305 kb on + strand, within GFF5116 at 218.306 kb on - strand, within GFF5116 at 218.306 kb on - strand, within GFF5116 at 218.306 kb on - strand, within GFF5116 at 218.306 kb on - strand, within GFF5116 at 218.779 kb on + strand at 218.779 kb on + strand at 218.779 kb on + strand at 218.779 kb on + strand at 218.779 kb on + strand at 218.780 kb on - strand at 218.780 kb on - strand at 218.780 kb on - strand at 218.780 kb on - strand at 218.789 kb on + strand at 218.789 kb on + strand at 218.789 kb on + strand at 218.789 kb on + strand at 218.790 kb on - strand at 218.790 kb on - strand at 218.790 kb on - strand at 218.941 kb on + strand at 218.941 kb on + strand at 218.941 kb on + strand at 218.941 kb on + strand at 218.942 kb on - strand at 218.942 kb on - strand at 218.942 kb on - strand at 218.942 kb on - strand at 218.942 kb on - strand at 218.942 kb on - strand at 218.942 kb on - strand at 218.942 kb on - strand at 218.942 kb on - strand at 218.942 kb on - strand at 218.942 kb on - strand at 218.942 kb on - strand at 218.942 kb on - strand at 218.942 kb on - strand at 219.064 kb on + strand, within GFF5117 at 219.064 kb on + strand, within GFF5117 at 219.064 kb on + strand, within GFF5117 at 219.064 kb on + strand, within GFF5117 at 219.064 kb on + strand, within GFF5117 at 219.065 kb on - strand, within GFF5117 at 219.065 kb on - strand, within GFF5117 at 219.065 kb on - strand, within GFF5117 at 219.065 kb on - strand, within GFF5117 at 219.065 kb on - strand, within GFF5117 at 219.232 kb on + strand, within GFF5117 at 219.232 kb on + strand, within GFF5117 at 219.232 kb on + strand, within GFF5117 at 219.232 kb on + strand, within GFF5117 at 219.233 kb on - strand, within GFF5117 at 219.233 kb on - strand, within GFF5117 at 219.233 kb on - strand, within GFF5117 at 219.233 kb on - strand, within GFF5117 at 219.233 kb on - strand, within GFF5117 at 219.233 kb on - strand, within GFF5117 at 219.392 kb on - strand, within GFF5117 at 219.392 kb on - strand, within GFF5117 at 219.392 kb on - strand, within GFF5117 at 219.392 kb on - strand, within GFF5117 at 219.392 kb on - strand, within GFF5117 at 219.392 kb on - strand, within GFF5117 at 219.392 kb on - strand, within GFF5117 at 219.544 kb on + strand, within GFF5117 at 220.028 kb on + strand, within GFF5118 at 220.074 kb on - strand, within GFF5118 at 220.209 kb on - strand, within GFF5118 at 220.209 kb on - strand, within GFF5118 at 220.319 kb on + strand, within GFF5118 at 220.319 kb on + strand, within GFF5118 at 220.320 kb on - strand, within GFF5118 at 220.476 kb on - strand, within GFF5118 at 220.476 kb on - strand, within GFF5118 at 220.476 kb on - strand, within GFF5118 at 220.632 kb on - strand at 220.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 217,885 - GFF5116 0.43 -1.2 217,886 - GFF5116 0.43 +0.5 218,302 + GFF5116 0.71 -0.4 218,303 - GFF5116 0.71 -0.6 218,303 - GFF5116 0.71 +1.1 218,305 + GFF5116 0.71 -0.3 218,305 + GFF5116 0.71 -0.4 218,305 + GFF5116 0.71 +0.3 218,305 + GFF5116 0.71 -0.6 218,305 + GFF5116 0.71 -0.0 218,306 - GFF5116 0.71 -1.3 218,306 - GFF5116 0.71 -0.3 218,306 - GFF5116 0.71 -0.1 218,306 - GFF5116 0.71 -1.1 218,779 + -0.2 218,779 + +0.5 218,779 + -0.7 218,779 + -0.8 218,779 + -1.7 218,780 - -0.3 218,780 - +4.0 218,780 - +0.1 218,780 - +0.0 218,789 + -0.2 218,789 + -3.1 218,789 + -0.1 218,789 + -0.4 218,790 - -1.5 218,790 - +1.0 218,790 - -0.1 218,941 + -1.4 218,941 + -0.0 218,941 + -0.6 218,941 + +0.5 218,942 - -0.1 218,942 - +0.4 218,942 - -1.3 218,942 - -0.1 218,942 - -0.6 218,942 - +0.2 218,942 - -0.4 218,942 - -0.1 218,942 - -0.9 218,942 - -0.5 218,942 - +0.1 218,942 - -0.2 218,942 - +0.1 218,942 - +0.3 219,064 + GFF5117 0.23 +0.7 219,064 + GFF5117 0.23 +1.1 219,064 + GFF5117 0.23 -1.3 219,064 + GFF5117 0.23 -0.2 219,064 + GFF5117 0.23 +0.0 219,065 - GFF5117 0.23 +0.3 219,065 - GFF5117 0.23 -0.3 219,065 - GFF5117 0.23 +0.1 219,065 - GFF5117 0.23 +0.0 219,065 - GFF5117 0.23 -0.6 219,232 + GFF5117 0.42 -0.0 219,232 + GFF5117 0.42 -1.7 219,232 + GFF5117 0.42 -0.5 219,232 + GFF5117 0.42 -0.2 219,233 - GFF5117 0.42 -0.2 219,233 - GFF5117 0.42 +0.3 219,233 - GFF5117 0.42 -0.6 219,233 - GFF5117 0.42 +0.0 219,233 - GFF5117 0.42 +0.4 219,233 - GFF5117 0.42 -0.6 219,392 - GFF5117 0.60 +0.3 219,392 - GFF5117 0.60 -0.2 219,392 - GFF5117 0.60 +0.1 219,392 - GFF5117 0.60 +0.3 219,392 - GFF5117 0.60 +1.7 219,392 - GFF5117 0.60 +1.2 219,392 - GFF5117 0.60 -1.0 219,544 + GFF5117 0.77 +0.2 220,028 + GFF5118 0.27 -1.8 220,074 - GFF5118 0.32 +0.1 220,209 - GFF5118 0.47 -1.1 220,209 - GFF5118 0.47 +0.4 220,319 + GFF5118 0.58 -0.6 220,319 + GFF5118 0.58 -2.3 220,320 - GFF5118 0.58 +0.1 220,476 - GFF5118 0.75 -0.0 220,476 - GFF5118 0.75 -2.1 220,476 - GFF5118 0.75 -0.7 220,632 - -1.3 220,632 - -0.9
Or see this region's nucleotide sequence