Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5067 and GFF5068 are separated by 98 nucleotides GFF5068 and GFF5069 are separated by 37 nucleotides
GFF5067 - Transcriptional regulator, LysR family, at 168,929 to 169,837
GFF5067
GFF5068 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 169,936 to 171,174
GFF5068
GFF5069 - BUG/TctC family periplasmic protein, at 171,212 to 172,180
GFF5069
Position (kb) 169
170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 169.714 kb on - strand, within GFF5067 at 169.714 kb on - strand, within GFF5067 at 169.897 kb on + strand at 169.898 kb on - strand at 169.898 kb on - strand at 169.898 kb on - strand at 170.026 kb on + strand at 170.027 kb on - strand at 170.027 kb on - strand at 170.216 kb on - strand, within GFF5068 at 170.216 kb on - strand, within GFF5068 at 170.266 kb on + strand, within GFF5068 at 170.266 kb on + strand, within GFF5068 at 170.266 kb on + strand, within GFF5068 at 170.266 kb on + strand, within GFF5068 at 170.267 kb on - strand, within GFF5068 at 170.267 kb on - strand, within GFF5068 at 170.441 kb on - strand, within GFF5068 at 170.511 kb on + strand, within GFF5068 at 170.569 kb on + strand, within GFF5068 at 170.570 kb on - strand, within GFF5068 at 170.767 kb on + strand, within GFF5068 at 170.946 kb on - strand, within GFF5068 at 170.950 kb on + strand, within GFF5068 at 170.950 kb on + strand, within GFF5068 at 170.951 kb on - strand, within GFF5068 at 170.951 kb on - strand, within GFF5068 at 171.115 kb on + strand at 171.115 kb on + strand at 171.115 kb on + strand at 171.115 kb on + strand at 171.115 kb on + strand at 171.115 kb on + strand at 171.115 kb on + strand at 171.115 kb on + strand at 171.116 kb on - strand at 171.116 kb on - strand at 171.166 kb on + strand at 171.166 kb on + strand at 171.167 kb on - strand at 171.167 kb on - strand at 171.317 kb on + strand, within GFF5069 at 171.317 kb on + strand, within GFF5069 at 171.318 kb on - strand, within GFF5069 at 171.318 kb on - strand, within GFF5069 at 171.318 kb on - strand, within GFF5069 at 171.467 kb on + strand, within GFF5069 at 171.515 kb on + strand, within GFF5069 at 171.515 kb on + strand, within GFF5069 at 171.530 kb on + strand, within GFF5069 at 171.530 kb on + strand, within GFF5069 at 171.530 kb on + strand, within GFF5069 at 171.530 kb on + strand, within GFF5069 at 171.531 kb on - strand, within GFF5069 at 171.531 kb on - strand, within GFF5069 at 171.531 kb on - strand, within GFF5069 at 171.671 kb on + strand, within GFF5069 at 171.671 kb on + strand, within GFF5069 at 171.671 kb on + strand, within GFF5069 at 171.671 kb on + strand, within GFF5069 at 171.671 kb on + strand, within GFF5069 at 171.671 kb on + strand, within GFF5069 at 171.671 kb on + strand, within GFF5069 at 171.671 kb on + strand, within GFF5069 at 171.671 kb on + strand, within GFF5069 at 171.672 kb on - strand, within GFF5069 at 171.672 kb on - strand, within GFF5069 at 171.672 kb on - strand, within GFF5069 at 171.672 kb on - strand, within GFF5069 at 171.672 kb on - strand, within GFF5069 at 171.758 kb on + strand, within GFF5069 at 171.758 kb on + strand, within GFF5069 at 171.758 kb on + strand, within GFF5069 at 171.758 kb on + strand, within GFF5069 at 171.758 kb on + strand, within GFF5069 at 171.758 kb on + strand, within GFF5069 at 171.759 kb on - strand, within GFF5069 at 171.759 kb on - strand, within GFF5069 at 171.759 kb on - strand, within GFF5069 at 171.759 kb on - strand, within GFF5069 at 171.759 kb on - strand, within GFF5069 at 171.809 kb on + strand, within GFF5069 at 171.809 kb on + strand, within GFF5069 at 171.809 kb on + strand, within GFF5069 at 171.809 kb on + strand, within GFF5069 at 171.809 kb on + strand, within GFF5069 at 171.809 kb on + strand, within GFF5069 at 171.809 kb on + strand, within GFF5069 at 171.809 kb on + strand, within GFF5069 at 171.809 kb on + strand, within GFF5069 at 171.809 kb on + strand, within GFF5069 at 171.809 kb on + strand, within GFF5069 at 171.809 kb on + strand, within GFF5069 at 171.809 kb on + strand, within GFF5069 at 171.810 kb on - strand, within GFF5069 at 171.810 kb on - strand, within GFF5069 at 171.810 kb on - strand, within GFF5069 at 171.810 kb on - strand, within GFF5069 at 171.810 kb on - strand, within GFF5069 at 171.810 kb on - strand, within GFF5069 at 171.810 kb on - strand, within GFF5069 at 171.963 kb on - strand, within GFF5069 at 171.963 kb on - strand, within GFF5069
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 169,714 - GFF5067 0.86 -0.9 169,714 - GFF5067 0.86 -0.0 169,897 + +1.3 169,898 - -0.5 169,898 - +0.3 169,898 - -1.1 170,026 + -0.1 170,027 - -2.2 170,027 - -0.2 170,216 - GFF5068 0.23 -0.6 170,216 - GFF5068 0.23 -0.5 170,266 + GFF5068 0.27 +0.1 170,266 + GFF5068 0.27 +0.6 170,266 + GFF5068 0.27 -1.0 170,266 + GFF5068 0.27 +0.7 170,267 - GFF5068 0.27 -0.1 170,267 - GFF5068 0.27 -0.4 170,441 - GFF5068 0.41 -0.7 170,511 + GFF5068 0.46 +0.8 170,569 + GFF5068 0.51 +0.0 170,570 - GFF5068 0.51 -0.3 170,767 + GFF5068 0.67 -1.4 170,946 - GFF5068 0.82 -0.4 170,950 + GFF5068 0.82 -0.6 170,950 + GFF5068 0.82 -0.5 170,951 - GFF5068 0.82 +0.1 170,951 - GFF5068 0.82 -0.3 171,115 + +1.5 171,115 + -0.1 171,115 + -0.7 171,115 + -0.0 171,115 + -0.6 171,115 + +0.3 171,115 + -0.1 171,115 + -1.2 171,116 - -0.2 171,116 - -0.4 171,166 + +1.1 171,166 + +0.1 171,167 - -0.0 171,167 - -0.7 171,317 + GFF5069 0.11 -0.6 171,317 + GFF5069 0.11 -0.6 171,318 - GFF5069 0.11 -1.3 171,318 - GFF5069 0.11 +0.7 171,318 - GFF5069 0.11 -0.6 171,467 + GFF5069 0.26 +0.4 171,515 + GFF5069 0.31 -0.3 171,515 + GFF5069 0.31 -0.1 171,530 + GFF5069 0.33 -0.4 171,530 + GFF5069 0.33 -1.2 171,530 + GFF5069 0.33 -0.8 171,530 + GFF5069 0.33 -0.3 171,531 - GFF5069 0.33 -1.2 171,531 - GFF5069 0.33 +0.1 171,531 - GFF5069 0.33 -0.2 171,671 + GFF5069 0.47 +0.6 171,671 + GFF5069 0.47 +0.5 171,671 + GFF5069 0.47 -0.5 171,671 + GFF5069 0.47 +0.4 171,671 + GFF5069 0.47 -1.4 171,671 + GFF5069 0.47 -0.6 171,671 + GFF5069 0.47 +0.4 171,671 + GFF5069 0.47 -0.2 171,671 + GFF5069 0.47 +0.0 171,672 - GFF5069 0.47 -1.0 171,672 - GFF5069 0.47 -0.2 171,672 - GFF5069 0.47 -0.3 171,672 - GFF5069 0.47 -0.7 171,672 - GFF5069 0.47 +1.2 171,758 + GFF5069 0.56 +0.2 171,758 + GFF5069 0.56 -2.1 171,758 + GFF5069 0.56 -1.0 171,758 + GFF5069 0.56 -1.1 171,758 + GFF5069 0.56 -0.5 171,758 + GFF5069 0.56 -0.7 171,759 - GFF5069 0.56 +0.4 171,759 - GFF5069 0.56 +0.7 171,759 - GFF5069 0.56 +1.0 171,759 - GFF5069 0.56 -2.2 171,759 - GFF5069 0.56 -0.3 171,809 + GFF5069 0.62 +0.3 171,809 + GFF5069 0.62 -0.2 171,809 + GFF5069 0.62 -0.1 171,809 + GFF5069 0.62 -0.3 171,809 + GFF5069 0.62 +0.5 171,809 + GFF5069 0.62 -0.3 171,809 + GFF5069 0.62 +0.4 171,809 + GFF5069 0.62 +0.3 171,809 + GFF5069 0.62 -0.6 171,809 + GFF5069 0.62 +0.3 171,809 + GFF5069 0.62 -0.6 171,809 + GFF5069 0.62 +0.3 171,809 + GFF5069 0.62 -0.4 171,810 - GFF5069 0.62 +0.5 171,810 - GFF5069 0.62 -3.2 171,810 - GFF5069 0.62 +0.3 171,810 - GFF5069 0.62 -0.2 171,810 - GFF5069 0.62 +0.3 171,810 - GFF5069 0.62 -0.2 171,810 - GFF5069 0.62 +0.1 171,963 - GFF5069 0.78 -0.4 171,963 - GFF5069 0.78 -0.8
Or see this region's nucleotide sequence