Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4967 and GFF4968 are separated by 19 nucleotides GFF4968 and GFF4969 overlap by 1 nucleotides GFF4969 and GFF4970 are separated by 24 nucleotides
GFF4967 - Glutathione S-transferase family protein, at 67,867 to 68,475
GFF4967
GFF4968 - Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, at 68,495 to 70,219
GFF4968
GFF4969 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 70,219 to 70,962
GFF4969
GFF4970 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 70,987 to 71,736
GFF4970
Position (kb) 68
69
70
71 Strain fitness (log2 ratio) -2
-1
0
1 at 67.512 kb on + strand at 67.512 kb on + strand at 67.512 kb on + strand at 67.512 kb on + strand at 67.512 kb on + strand at 67.648 kb on + strand at 67.649 kb on - strand at 67.649 kb on - strand at 67.818 kb on - strand at 68.036 kb on + strand, within GFF4967 at 68.631 kb on + strand at 68.631 kb on + strand at 68.631 kb on + strand at 68.632 kb on - strand at 68.632 kb on - strand at 68.737 kb on - strand, within GFF4968 at 68.737 kb on - strand, within GFF4968 at 68.809 kb on - strand, within GFF4968 at 68.943 kb on + strand, within GFF4968 at 68.944 kb on - strand, within GFF4968 at 68.949 kb on + strand, within GFF4968 at 68.949 kb on + strand, within GFF4968 at 69.078 kb on + strand, within GFF4968 at 69.079 kb on - strand, within GFF4968 at 69.103 kb on - strand, within GFF4968 at 69.354 kb on + strand, within GFF4968 at 69.843 kb on + strand, within GFF4968 at 69.847 kb on - strand, within GFF4968 at 69.847 kb on - strand, within GFF4968 at 69.858 kb on + strand, within GFF4968 at 69.859 kb on - strand, within GFF4968 at 69.900 kb on + strand, within GFF4968 at 69.982 kb on - strand, within GFF4968 at 70.484 kb on + strand, within GFF4969 at 70.514 kb on + strand, within GFF4969 at 70.514 kb on + strand, within GFF4969 at 70.514 kb on + strand, within GFF4969 at 70.515 kb on - strand, within GFF4969 at 70.515 kb on - strand, within GFF4969 at 70.637 kb on + strand, within GFF4969 at 70.637 kb on + strand, within GFF4969 at 70.637 kb on + strand, within GFF4969 at 70.844 kb on + strand, within GFF4969 at 70.844 kb on + strand, within GFF4969 at 71.036 kb on + strand at 71.036 kb on + strand at 71.036 kb on + strand at 71.036 kb on + strand at 71.036 kb on + strand at 71.037 kb on - strand at 71.037 kb on - strand at 71.037 kb on - strand at 71.040 kb on + strand at 71.041 kb on - strand at 71.041 kb on - strand at 71.041 kb on - strand at 71.121 kb on + strand, within GFF4970 at 71.121 kb on + strand, within GFF4970 at 71.121 kb on + strand, within GFF4970 at 71.122 kb on - strand, within GFF4970 at 71.122 kb on - strand, within GFF4970 at 71.122 kb on - strand, within GFF4970 at 71.123 kb on + strand, within GFF4970 at 71.123 kb on + strand, within GFF4970 at 71.123 kb on + strand, within GFF4970 at 71.123 kb on + strand, within GFF4970 at 71.124 kb on - strand, within GFF4970 at 71.124 kb on - strand, within GFF4970
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 67,512 + +0.7 67,512 + -0.9 67,512 + -0.5 67,512 + +1.4 67,512 + -1.5 67,648 + -0.3 67,649 - +0.2 67,649 - -0.6 67,818 - -0.4 68,036 + GFF4967 0.28 +0.1 68,631 + +0.1 68,631 + -2.1 68,631 + -0.7 68,632 - -0.2 68,632 - -0.1 68,737 - GFF4968 0.14 -1.2 68,737 - GFF4968 0.14 -0.3 68,809 - GFF4968 0.18 +0.8 68,943 + GFF4968 0.26 -0.3 68,944 - GFF4968 0.26 -0.2 68,949 + GFF4968 0.26 -0.7 68,949 + GFF4968 0.26 -0.8 69,078 + GFF4968 0.34 -1.4 69,079 - GFF4968 0.34 -1.0 69,103 - GFF4968 0.35 -2.0 69,354 + GFF4968 0.50 +0.2 69,843 + GFF4968 0.78 +0.9 69,847 - GFF4968 0.78 +0.3 69,847 - GFF4968 0.78 -1.3 69,858 + GFF4968 0.79 -0.2 69,859 - GFF4968 0.79 -0.4 69,900 + GFF4968 0.81 -0.5 69,982 - GFF4968 0.86 +0.1 70,484 + GFF4969 0.36 +0.5 70,514 + GFF4969 0.40 -0.4 70,514 + GFF4969 0.40 -0.3 70,514 + GFF4969 0.40 -0.2 70,515 - GFF4969 0.40 -0.0 70,515 - GFF4969 0.40 +0.2 70,637 + GFF4969 0.56 +0.7 70,637 + GFF4969 0.56 +1.2 70,637 + GFF4969 0.56 -0.1 70,844 + GFF4969 0.84 +0.7 70,844 + GFF4969 0.84 -0.6 71,036 + -1.0 71,036 + -1.3 71,036 + -0.5 71,036 + -0.6 71,036 + -0.5 71,037 - -1.1 71,037 - -0.3 71,037 - -0.2 71,040 + +0.3 71,041 - -0.2 71,041 - +0.4 71,041 - -0.4 71,121 + GFF4970 0.18 +0.7 71,121 + GFF4970 0.18 -0.6 71,121 + GFF4970 0.18 -1.7 71,122 - GFF4970 0.18 -0.3 71,122 - GFF4970 0.18 -1.4 71,122 - GFF4970 0.18 +0.5 71,123 + GFF4970 0.18 -0.6 71,123 + GFF4970 0.18 +0.0 71,123 + GFF4970 0.18 +0.1 71,123 + GFF4970 0.18 +0.4 71,124 - GFF4970 0.18 +0.7 71,124 - GFF4970 0.18 -0.4
Or see this region's nucleotide sequence