Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4925 and GFF4926 are separated by 69 nucleotides GFF4926 and GFF4927 are separated by 73 nucleotides GFF4927 and GFF4928 overlap by 4 nucleotides
GFF4925 - ATPase component BioM of energizing module of biotin ECF transporter, at 16,418 to 17,137
GFF4925
GFF4926 - Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23), at 17,207 to 18,049
GFF4926
GFF4927 - Citrate-proton symporter, at 18,123 to 19,418
GFF4927
GFF4928 - hypothetical protein, at 19,415 to 21,757
GFF4928
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.179 kb on - strand at 17.415 kb on + strand, within GFF4926 at 17.415 kb on + strand, within GFF4926 at 17.416 kb on - strand, within GFF4926 at 17.416 kb on - strand, within GFF4926 at 17.514 kb on + strand, within GFF4926 at 17.514 kb on + strand, within GFF4926 at 17.577 kb on + strand, within GFF4926 at 17.577 kb on + strand, within GFF4926 at 17.577 kb on + strand, within GFF4926 at 17.578 kb on - strand, within GFF4926 at 17.578 kb on - strand, within GFF4926 at 17.624 kb on + strand, within GFF4926 at 17.648 kb on + strand, within GFF4926 at 17.649 kb on - strand, within GFF4926 at 17.649 kb on - strand, within GFF4926 at 17.649 kb on - strand, within GFF4926 at 17.649 kb on - strand, within GFF4926 at 17.871 kb on + strand, within GFF4926 at 17.871 kb on + strand, within GFF4926 at 18.087 kb on + strand at 18.088 kb on - strand at 18.088 kb on - strand at 18.124 kb on + strand at 18.125 kb on - strand at 18.137 kb on - strand at 18.190 kb on + strand at 18.190 kb on + strand at 18.190 kb on + strand at 18.190 kb on + strand at 18.190 kb on + strand at 18.190 kb on + strand at 18.190 kb on + strand at 18.190 kb on + strand at 18.191 kb on - strand at 18.191 kb on - strand at 18.191 kb on - strand at 18.191 kb on - strand at 18.283 kb on + strand, within GFF4927 at 18.283 kb on + strand, within GFF4927 at 18.284 kb on - strand, within GFF4927 at 18.284 kb on - strand, within GFF4927 at 18.284 kb on - strand, within GFF4927 at 18.284 kb on - strand, within GFF4927 at 18.358 kb on + strand, within GFF4927 at 18.359 kb on - strand, within GFF4927 at 18.423 kb on - strand, within GFF4927 at 18.433 kb on + strand, within GFF4927 at 18.433 kb on + strand, within GFF4927 at 18.434 kb on - strand, within GFF4927 at 18.434 kb on - strand, within GFF4927 at 18.434 kb on - strand, within GFF4927 at 18.634 kb on + strand, within GFF4927 at 18.634 kb on + strand, within GFF4927 at 18.635 kb on - strand, within GFF4927 at 18.635 kb on - strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 19.153 kb on + strand, within GFF4927 at 19.153 kb on + strand, within GFF4927 at 19.154 kb on - strand, within GFF4927 at 19.154 kb on - strand, within GFF4927 at 19.154 kb on - strand, within GFF4927 at 19.154 kb on - strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.289 kb on - strand at 19.596 kb on + strand at 19.596 kb on + strand at 19.596 kb on + strand at 19.596 kb on + strand at 19.597 kb on - strand at 19.597 kb on - strand at 19.597 kb on - strand at 19.647 kb on + strand at 19.647 kb on + strand at 19.648 kb on - strand at 19.648 kb on - strand at 19.648 kb on - strand at 19.657 kb on - strand, within GFF4928 at 19.657 kb on - strand, within GFF4928 at 19.908 kb on + strand, within GFF4928 at 19.909 kb on - strand, within GFF4928 at 20.028 kb on + strand, within GFF4928 at 20.029 kb on - strand, within GFF4928 at 20.139 kb on + strand, within GFF4928 at 20.139 kb on + strand, within GFF4928 at 20.140 kb on - strand, within GFF4928 at 20.140 kb on - strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.202 kb on + strand, within GFF4928 at 20.203 kb on - strand, within GFF4928 at 20.271 kb on + strand, within GFF4928 at 20.272 kb on - strand, within GFF4928 at 20.272 kb on - strand, within GFF4928 at 20.272 kb on - strand, within GFF4928 at 20.331 kb on + strand, within GFF4928 at 20.331 kb on + strand, within GFF4928 at 20.332 kb on - strand, within GFF4928 at 20.332 kb on - strand, within GFF4928 at 20.409 kb on + strand, within GFF4928 at 20.409 kb on + strand, within GFF4928 at 20.410 kb on - strand, within GFF4928
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 17,179 - -0.0 17,415 + GFF4926 0.25 -1.5 17,415 + GFF4926 0.25 +1.5 17,416 - GFF4926 0.25 -0.2 17,416 - GFF4926 0.25 -0.7 17,514 + GFF4926 0.36 -0.6 17,514 + GFF4926 0.36 +0.4 17,577 + GFF4926 0.44 -0.3 17,577 + GFF4926 0.44 -1.2 17,577 + GFF4926 0.44 -2.0 17,578 - GFF4926 0.44 -1.1 17,578 - GFF4926 0.44 -0.4 17,624 + GFF4926 0.49 -0.6 17,648 + GFF4926 0.52 +0.7 17,649 - GFF4926 0.52 -1.2 17,649 - GFF4926 0.52 -0.4 17,649 - GFF4926 0.52 -0.6 17,649 - GFF4926 0.52 +0.1 17,871 + GFF4926 0.79 +0.7 17,871 + GFF4926 0.79 -0.0 18,087 + +0.8 18,088 - -0.2 18,088 - -0.7 18,124 + -0.5 18,125 - +0.0 18,137 - -0.8 18,190 + +1.0 18,190 + +0.5 18,190 + -0.4 18,190 + +0.2 18,190 + +0.1 18,190 + +1.4 18,190 + -1.0 18,190 + -0.1 18,191 - -0.8 18,191 - +0.1 18,191 - -0.2 18,191 - +0.4 18,283 + GFF4927 0.12 -0.6 18,283 + GFF4927 0.12 -1.7 18,284 - GFF4927 0.12 -0.4 18,284 - GFF4927 0.12 +0.5 18,284 - GFF4927 0.12 -1.1 18,284 - GFF4927 0.12 -0.5 18,358 + GFF4927 0.18 -0.0 18,359 - GFF4927 0.18 +0.7 18,423 - GFF4927 0.23 -0.5 18,433 + GFF4927 0.24 +0.1 18,433 + GFF4927 0.24 -0.6 18,434 - GFF4927 0.24 -0.0 18,434 - GFF4927 0.24 +0.1 18,434 - GFF4927 0.24 +0.1 18,634 + GFF4927 0.39 +2.7 18,634 + GFF4927 0.39 -0.6 18,635 - GFF4927 0.40 +0.1 18,635 - GFF4927 0.40 -0.9 18,775 + GFF4927 0.50 +0.5 18,775 + GFF4927 0.50 -0.6 18,775 + GFF4927 0.50 +0.1 18,775 + GFF4927 0.50 +1.7 18,775 + GFF4927 0.50 -0.6 18,775 + GFF4927 0.50 -0.6 18,775 + GFF4927 0.50 -0.0 18,775 + GFF4927 0.50 -1.5 18,775 + GFF4927 0.50 -0.6 18,776 - GFF4927 0.50 -0.8 18,776 - GFF4927 0.50 -0.7 18,776 - GFF4927 0.50 -0.5 18,776 - GFF4927 0.50 +0.2 18,776 - GFF4927 0.50 +0.7 18,776 - GFF4927 0.50 -0.2 18,776 - GFF4927 0.50 -0.5 18,776 - GFF4927 0.50 +0.0 18,776 - GFF4927 0.50 -1.7 18,776 - GFF4927 0.50 -0.4 19,153 + GFF4927 0.79 -0.0 19,153 + GFF4927 0.79 -0.3 19,154 - GFF4927 0.80 -0.2 19,154 - GFF4927 0.80 -1.3 19,154 - GFF4927 0.80 +0.3 19,154 - GFF4927 0.80 -0.5 19,288 + GFF4927 0.90 +1.7 19,288 + GFF4927 0.90 -0.5 19,288 + GFF4927 0.90 -1.7 19,288 + GFF4927 0.90 -0.2 19,288 + GFF4927 0.90 -0.1 19,288 + GFF4927 0.90 -0.6 19,288 + GFF4927 0.90 +0.7 19,289 - -0.7 19,596 + +0.1 19,596 + +0.4 19,596 + -0.5 19,596 + +0.1 19,597 - -1.0 19,597 - -0.0 19,597 - -0.5 19,647 + -0.8 19,647 + +0.3 19,648 - +0.1 19,648 - -0.6 19,648 - -0.0 19,657 - GFF4928 0.10 +0.3 19,657 - GFF4928 0.10 -0.9 19,908 + GFF4928 0.21 +0.7 19,909 - GFF4928 0.21 -1.9 20,028 + GFF4928 0.26 -0.3 20,029 - GFF4928 0.26 +0.3 20,139 + GFF4928 0.31 -0.4 20,139 + GFF4928 0.31 +0.1 20,140 - GFF4928 0.31 +0.5 20,140 - GFF4928 0.31 -0.0 20,154 + GFF4928 0.32 +0.1 20,154 + GFF4928 0.32 -0.3 20,154 + GFF4928 0.32 +0.4 20,154 + GFF4928 0.32 -1.1 20,154 + GFF4928 0.32 +1.0 20,154 + GFF4928 0.32 -0.4 20,154 + GFF4928 0.32 +0.1 20,154 + GFF4928 0.32 -0.2 20,154 + GFF4928 0.32 -0.1 20,154 + GFF4928 0.32 -1.2 20,154 + GFF4928 0.32 -0.5 20,154 + GFF4928 0.32 +1.1 20,155 - GFF4928 0.32 -0.2 20,155 - GFF4928 0.32 -0.4 20,155 - GFF4928 0.32 -0.9 20,155 - GFF4928 0.32 -0.7 20,155 - GFF4928 0.32 -0.2 20,155 - GFF4928 0.32 -0.2 20,155 - GFF4928 0.32 -1.6 20,155 - GFF4928 0.32 +1.1 20,155 - GFF4928 0.32 +1.0 20,202 + GFF4928 0.34 +0.2 20,203 - GFF4928 0.34 -2.4 20,271 + GFF4928 0.37 -0.6 20,272 - GFF4928 0.37 -0.3 20,272 - GFF4928 0.37 +0.4 20,272 - GFF4928 0.37 -1.0 20,331 + GFF4928 0.39 -0.7 20,331 + GFF4928 0.39 -0.9 20,332 - GFF4928 0.39 -1.2 20,332 - GFF4928 0.39 -0.9 20,409 + GFF4928 0.42 -0.1 20,409 + GFF4928 0.42 +0.4 20,410 - GFF4928 0.42 +0.4
Or see this region's nucleotide sequence