Strain Fitness in Variovorax sp. SCN45 around GFF4865

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4864 and GFF4865 are separated by 11 nucleotidesGFF4865 and GFF4866 are separated by 34 nucleotides GFF4864 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 235,872 to 237,053 GFF4864 GFF4865 - Enoyl-CoA hydratase (EC 4.2.1.17), at 237,065 to 237,850 GFF4865 GFF4866 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 237,885 to 238,667 GFF4866 Position (kb) 237 238Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 236.089 kb on + strand, within GFF4864at 236.089 kb on + strand, within GFF4864at 236.090 kb on - strand, within GFF4864at 236.199 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.290 kb on - strand, within GFF4864at 236.290 kb on - strand, within GFF4864at 236.290 kb on - strand, within GFF4864at 236.314 kb on - strand, within GFF4864at 236.659 kb on - strand, within GFF4864at 236.659 kb on - strand, within GFF4864at 236.986 kb on - strandat 236.986 kb on - strandat 237.026 kb on + strandat 237.026 kb on + strandat 237.027 kb on - strandat 237.027 kb on - strandat 237.027 kb on - strandat 237.027 kb on - strandat 237.027 kb on - strandat 237.027 kb on - strandat 237.027 kb on - strandat 237.027 kb on - strandat 237.208 kb on + strand, within GFF4865at 237.208 kb on + strand, within GFF4865at 237.411 kb on + strand, within GFF4865at 237.411 kb on + strand, within GFF4865at 237.411 kb on + strand, within GFF4865at 237.412 kb on - strand, within GFF4865at 237.412 kb on - strand, within GFF4865at 237.529 kb on + strand, within GFF4865at 237.530 kb on - strand, within GFF4865at 237.530 kb on - strand, within GFF4865at 237.530 kb on - strand, within GFF4865at 237.760 kb on + strand, within GFF4865at 237.760 kb on + strand, within GFF4865at 237.760 kb on + strand, within GFF4865at 237.760 kb on + strand, within GFF4865at 237.761 kb on - strand, within GFF4865at 237.761 kb on - strand, within GFF4865at 237.761 kb on - strand, within GFF4865at 237.761 kb on - strand, within GFF4865at 237.761 kb on - strand, within GFF4865at 237.761 kb on - strand, within GFF4865at 237.761 kb on - strand, within GFF4865at 237.848 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 238.044 kb on + strand, within GFF4866at 238.045 kb on - strand, within GFF4866at 238.281 kb on + strand, within GFF4866at 238.283 kb on + strand, within GFF4866at 238.284 kb on - strand, within GFF4866at 238.284 kb on - strand, within GFF4866at 238.380 kb on + strand, within GFF4866at 238.380 kb on + strand, within GFF4866at 238.380 kb on + strand, within GFF4866at 238.380 kb on + strand, within GFF4866at 238.380 kb on + strand, within GFF4866at 238.380 kb on + strand, within GFF4866at 238.380 kb on + strand, within GFF4866at 238.380 kb on + strand, within GFF4866at 238.380 kb on + strand, within GFF4866at 238.380 kb on + strand, within GFF4866at 238.380 kb on + strand, within GFF4866at 238.380 kb on + strand, within GFF4866at 238.380 kb on + strand, within GFF4866at 238.381 kb on - strand, within GFF4866at 238.381 kb on - strand, within GFF4866at 238.381 kb on - strand, within GFF4866at 238.381 kb on - strand, within GFF4866at 238.381 kb on - strand, within GFF4866at 238.381 kb on - strand, within GFF4866at 238.381 kb on - strand, within GFF4866at 238.381 kb on - strand, within GFF4866at 238.381 kb on - strand, within GFF4866at 238.381 kb on - strand, within GFF4866at 238.381 kb on - strand, within GFF4866at 238.484 kb on + strand, within GFF4866at 238.485 kb on - strand, within GFF4866at 238.485 kb on - strand, within GFF4866at 238.485 kb on - strand, within GFF4866at 238.485 kb on - strand, within GFF4866at 238.601 kb on + strandat 238.601 kb on + strandat 238.602 kb on - strandat 238.602 kb on - strandat 238.602 kb on - strandat 238.611 kb on + strandat 238.612 kb on - strandat 238.612 kb on - strandat 238.718 kb on - strandat 238.718 kb on - strandat 238.750 kb on + strandat 238.750 kb on + strandat 238.750 kb on + strandat 238.750 kb on + strandat 238.750 kb on + strandat 238.750 kb on + strandat 238.750 kb on + strandat 238.750 kb on + strandat 238.751 kb on - strandat 238.751 kb on - strandat 238.751 kb on - strandat 238.751 kb on - strandat 238.751 kb on - strandat 238.751 kb on - strandat 238.751 kb on - strandat 238.751 kb on - strandat 238.798 kb on + strandat 238.798 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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236,089 + GFF4864 0.18 +0.4
236,089 + GFF4864 0.18 +0.0
236,090 - GFF4864 0.18 +0.6
236,199 + GFF4864 0.28 -0.4
236,289 + GFF4864 0.35 -0.7
236,289 + GFF4864 0.35 +0.3
236,289 + GFF4864 0.35 +0.2
236,289 + GFF4864 0.35 +0.1
236,289 + GFF4864 0.35 -1.0
236,289 + GFF4864 0.35 -0.9
236,290 - GFF4864 0.35 +0.7
236,290 - GFF4864 0.35 -0.3
236,290 - GFF4864 0.35 +1.8
236,314 - GFF4864 0.37 -0.0
236,659 - GFF4864 0.67 +0.1
236,659 - GFF4864 0.67 +1.5
236,986 - -0.9
236,986 - -0.6
237,026 + -1.7
237,026 + -0.3
237,027 - -0.7
237,027 - -0.3
237,027 - -1.4
237,027 - +0.5
237,027 - -0.6
237,027 - +0.1
237,027 - -0.4
237,027 - -1.4
237,208 + GFF4865 0.18 -0.2
237,208 + GFF4865 0.18 +0.2
237,411 + GFF4865 0.44 -0.0
237,411 + GFF4865 0.44 +0.4
237,411 + GFF4865 0.44 -0.1
237,412 - GFF4865 0.44 -0.5
237,412 - GFF4865 0.44 +0.3
237,529 + GFF4865 0.59 +0.1
237,530 - GFF4865 0.59 +0.4
237,530 - GFF4865 0.59 -0.7
237,530 - GFF4865 0.59 +0.1
237,760 + GFF4865 0.88 +0.8
237,760 + GFF4865 0.88 -0.6
237,760 + GFF4865 0.88 +2.0
237,760 + GFF4865 0.88 -0.1
237,761 - GFF4865 0.89 -0.2
237,761 - GFF4865 0.89 +0.5
237,761 - GFF4865 0.89 -0.3
237,761 - GFF4865 0.89 +0.2
237,761 - GFF4865 0.89 -0.7
237,761 - GFF4865 0.89 +0.4
237,761 - GFF4865 0.89 +0.5
237,848 + -0.5
237,859 + -1.6
237,859 + +0.4
237,859 + +0.4
237,859 + +1.0
237,859 + +0.8
237,859 + -0.9
237,859 + -1.0
237,859 + +0.1
237,859 + -0.9
237,859 + +0.5
237,860 - +0.6
237,860 - +0.2
237,860 - -0.5
237,860 - +0.7
237,860 - -0.8
237,860 - -0.5
237,860 - +0.5
237,860 - -2.1
237,860 - +0.4
237,860 - +0.3
237,860 - +0.2
238,044 + GFF4866 0.20 -2.9
238,045 - GFF4866 0.20 -0.1
238,281 + GFF4866 0.51 -0.0
238,283 + GFF4866 0.51 -0.2
238,284 - GFF4866 0.51 -0.2
238,284 - GFF4866 0.51 -2.6
238,380 + GFF4866 0.63 -0.0
238,380 + GFF4866 0.63 -0.1
238,380 + GFF4866 0.63 -1.3
238,380 + GFF4866 0.63 +0.2
238,380 + GFF4866 0.63 -0.3
238,380 + GFF4866 0.63 -0.2
238,380 + GFF4866 0.63 -1.8
238,380 + GFF4866 0.63 -0.6
238,380 + GFF4866 0.63 -0.7
238,380 + GFF4866 0.63 -0.1
238,380 + GFF4866 0.63 -1.1
238,380 + GFF4866 0.63 +0.2
238,380 + GFF4866 0.63 +0.2
238,381 - GFF4866 0.63 -0.2
238,381 - GFF4866 0.63 +0.5
238,381 - GFF4866 0.63 -0.4
238,381 - GFF4866 0.63 -2.2
238,381 - GFF4866 0.63 +1.7
238,381 - GFF4866 0.63 -0.7
238,381 - GFF4866 0.63 -0.2
238,381 - GFF4866 0.63 -0.6
238,381 - GFF4866 0.63 -0.4
238,381 - GFF4866 0.63 -0.1
238,381 - GFF4866 0.63 -0.3
238,484 + GFF4866 0.77 +0.9
238,485 - GFF4866 0.77 -0.2
238,485 - GFF4866 0.77 +1.0
238,485 - GFF4866 0.77 -1.1
238,485 - GFF4866 0.77 +0.4
238,601 + +0.0
238,601 + +0.0
238,602 - -1.1
238,602 - +0.1
238,602 - -0.7
238,611 + -1.0
238,612 - -0.5
238,612 - -1.1
238,718 - -1.2
238,718 - -0.3
238,750 + +0.4
238,750 + +0.2
238,750 + -0.1
238,750 + -1.4
238,750 + +0.5
238,750 + +1.4
238,750 + +0.1
238,750 + -0.4
238,751 - -0.3
238,751 - +0.1
238,751 - -0.3
238,751 - -1.5
238,751 - -0.3
238,751 - +0.1
238,751 - +0.7
238,751 - -0.1
238,798 + -0.1
238,798 + -0.1

Or see this region's nucleotide sequence